Shell Scarlet S, Bar-Oz Michal, Xiao Junpei, Pandey Manitosh, Bellardinelli Juan, Jackson Mary, Oehlers Stefan H, Barkan Daniel, Meir Michal
Department of Biology and Biotechnology and Program in Bioinformatics and Computational Biology, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Koret School of Veterinary Medicine, The Robert E. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.
bioRxiv. 2025 May 8:2025.05.07.652718. doi: 10.1101/2025.05.07.652718.
is a major human pathogen, mostly infecting people with pre-existing lung conditions such as cystic fibrosis. The production of glycopeptidolipids (GPL) is a major determinant of virulence of this bacterium, with clinical isolates that lack GPL generally exhibiting more aggressive clinical behavior. The current paradigm is that GPL production is abolished via irreversible, spontaneous mutations taking place as part of in-host evolution. Little is known about the mechanisms or extent to which GPL production may be regulated. Here we describe an unusual TetR-like transcription factor of MAB_1638, that appears to be a strong positive regulator of the entire GPL biosynthesis and export gene cluster through a combination of direct and indirect mechanisms. The inactivation of abolished GPL production and thus led to stable rough colony morphology, as well as increased virulence in infection models, characteristic of rough, non-GPL-producers. Transcriptome analysis found the mutant had 118 differentially expressed genes, including the GPL locus and a second, recently described GPL-like locus that produces a related glycosylated lipopeptide called GP8L. Chromatin Immunoprecipitation and sequencing revealed a consensus inverted-repeat DNA sequence motif characteristic of genes regulated by Together, appears to encode a transcription factor required for production of GPL and therefore having a profound effect on virulence traits. We propose naming this gene (). This finding raises the important possibility that strains appearing smooth in laboratory growth conditions may nonetheless downregulate GPL-cluster genes in other conditions, including in-patient conditions, and thus acquire the phenotypic characteristics of rough strains.
是一种主要的人类病原体,主要感染患有诸如囊性纤维化等已有肺部疾病的人。糖肽脂(GPL)的产生是这种细菌毒力的主要决定因素,缺乏GPL的临床分离株通常表现出更具侵袭性的临床行为。当前的模式是,GPL的产生通过作为宿主内进化一部分发生的不可逆的自发突变而被消除。关于GPL产生可能受到调控的机制或程度知之甚少。在这里,我们描述了一种不寻常的类TetR转录因子MAB_1638,它似乎通过直接和间接机制的组合,对整个GPL生物合成和输出基因簇起到强大的正调控作用。MAB_1638的失活消除了GPL的产生,从而导致稳定的粗糙菌落形态,以及在感染模型中增加的毒力,这是粗糙的、不产生GPL的菌株的特征。转录组分析发现,MAB_1638突变体有118个差异表达基因,包括GPL基因座和第二个最近描述的产生一种名为GP8L的相关糖基化脂肽的GPL样基因座。染色质免疫沉淀和测序揭示了由MAB_1638调控的基因所特有的共有反向重复DNA序列基序。总之,MAB_1638似乎编码一种GPL产生所需的转录因子,因此对毒力性状有深远影响。我们建议将这个基因命名为RgpR(调节糖肽脂产生)。这一发现提出了一个重要的可能性,即在实验室生长条件下看起来光滑的菌株,在其他条件下,包括在患者体内条件下,可能仍然会下调GPL基因簇基因,从而获得粗糙菌株的表型特征。