Zhang Y, Liu Y Z, Zhang P H, Wang D, Zhang X Y
Beijing Center for Disease Prevention and Control, Beijing Key Laboratory of Diagnostic and Traceability Technologies for Food Poisoning, Beijing 100013, China.
Zhonghua Yu Fang Yi Xue Za Zhi. 2025 Jul 6;59(7):997-1003. doi: 10.3760/cma.j.cn112150-20250106-00014.
To analyze the genomic characteristics and antibiotic resistance of isolated from food sources in Beijing City in 2022. A total of 83 strains of were isolated from three major categories of food, namely raw poultry, raw livestock meat and ready-to-eat foods, in Beijing's food safety risk monitoring in 2022. Whole-genome sequencing (WGS) was performed to determine serogroups, multilocus sequence typing (ST) and core genome multilocus sequence typing (cgMLST). Virulence genes and antibiotic resistance genes were identified using the VFDB and ResFinder 3.0 databases. Antimicrobial susceptibility to eight antibiotics was tested via the broth microdilution method. The predominant serogroup was 1/2a, 3a (61.2%). All the isolates were divided into 14 STs, with ST121 (21.7%), ST8 (20.5%), ST9 (13.3%), and ST87 (13.3%) as the dominant types. All 83 isolates were classified into 75 cgMLST types, with six clusters showing identical profiles, indicating potential clonal transmission. Comparative genomic analysis revealed that strains of the same ST clustered together regardless of geographic origin, and some Beijing isolates differed by fewer than 10 alleles from strains isolated in other countries. All the isolates in the study carried virulence islands 1(LIPI-1) and LIPI-2. LIPI-3 was detected in ST1, ST11 and ST3 isolates, while LIPI-4 was found in ST87 isolates. About 42 isolates (50.6%, including ST1, ST11, ST5, ST307, ST8, ST9, ST155, and ST3) harbored SSI-1, and 18 ST121 isolates carried SSI-2. Only 3.61% (three strains) and 4.82% (four strains) of isolates exhibited resistance to tetracycline and erythromycin, respectively. No resistance to other tested antibiotics was observed. Foodborne in Beijing exhibits high genomic diversity but is dominated by specific STs, some of which are associated with hypervirulence. Some Beijing isolates have homology with food-derived isolates from other countries.
分析2022年从北京市食品源分离出的[具体细菌名称未给出]的基因组特征和抗生素耐药性。2022年在北京食品安全风险监测中,从生禽、生畜肉和即食食品三大类食品中总共分离出83株[具体细菌名称未给出]。进行全基因组测序(WGS)以确定血清群、多位点序列分型(ST)和核心基因组多位点序列分型(cgMLST)。使用VFDB和ResFinder 3.0数据库鉴定毒力基因和抗生素耐药基因。通过肉汤微量稀释法测试对八种抗生素的药敏性。主要血清群为1/2a、3a(61.2%)。所有分离株分为14个ST型,其中ST121(21.7%)、ST8(20.5%)、ST9(13.3%)和ST87(13.3%)为优势型。所有83株分离株分为75个cgMLST型,有六个簇显示相同的图谱,表明可能存在克隆传播。比较基因组分析表明,同一ST型的菌株无论地理来源如何都聚集在一起,一些北京分离株与其他国家分离出的菌株相差不到10个等位基因。研究中的所有分离株都携带毒力岛1(LIPI - 1)和LIPI - 2。在ST1、ST11和ST3分离株中检测到LIPI - 3,在ST87分离株中发现LIPI - 4。约42株分离株(50.6%,包括ST1、ST11、ST5、ST307、ST8、ST9、ST155和ST3)携带SSI - 1,18株ST121分离株携带SSI - 2。仅分别有3.61%(三株)和4.82%(四株)的分离株对四环素和红霉素耐药。未观察到对其他测试抗生素的耐药性。北京的食源性[具体细菌名称未给出]表现出高基因组多样性,但以特定的ST型为主,其中一些与高毒力有关。一些北京分离株与其他国家的食品源分离株具有同源性。