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利用生物信息学和验证数据构建急性髓系白血病中肿瘤免疫微环境驱动的预后模型。

Constructing a tumor immune microenvironment-driven prognostic model in acute myeloid leukemia using bioinformatics and validation data.

作者信息

Navidinia Amir Abbas, Keshavarz Ali, Dehaghi Bentol Hoda Kuhestani, Khayami Reza, Karami Najibe, Amiri Vahid, Farsani Mehdi Allahbakhshian

机构信息

Department of Hematology and Blood Banking, School of Allied Medical Sciences, Shahid Beheshti University of Medical Sciences, Tehran, Iran.

Department of Medical Genetics and Molecular Medicine, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.

出版信息

Sci Rep. 2025 Jul 18;15(1):26123. doi: 10.1038/s41598-025-03557-9.

Abstract

The tumor immune microenvironment (TIME) is a critical determinant of prognosis in acute myeloid leukemia (AML). This study aimed to develop a prognostic model based on immune-related hub differentially expressed genes (hub-DEGs) to refine risk stratification and identify therapeutic targets. Transcriptomic and clinical data from 149 TCGA-AML patients were analyzed using ESTIMATE and xCell algorithms to infer immune scores. Differentially expressed genes (DEGs) between high/low immune score groups were identified, followed by functional enrichment, protein-protein interaction (PPI) network analysis for selecting the hub-DEGs with the highest degree scores, and univariate Cox regression to pinpoint prognostic genes. External validation was performed on 562 GEO-AML patients. The final genes were selected by intersecting the prognostic DEGs and hub-DEGs. Next the immune prognostic model (IPM) was created using these genes. xCell and CIBERSORT algorithm were used to assess the correlation of IPM and different immune cells. Finally, Experimental validation of key genes (CD163, MRC1) was conducted via RT-PCR in 40 AML and 10 control samples. Immune scores correlated with FAB classification (ESTIMATE: p-value = 1.4e - 8; xCell: p-value = 3.7e - 9) and overall survival (ESTIMATE: v = 0.041). Analysis identified 680 immune-related DEGs enriched in immune response pathways. Intersection of prognostic DEGs (n = 34) and hub-DEGs (n = 30) yielded four genes (CD163, IL10, MRC1, FCGR2B). A risk score model stratified patients into high/low-risk groups with divergent survival (p-value = 0.00072). ROC analysis demonstrated predictive accuracy (AUC: 63.38-68.5% for 1-5-year survival). TIME analysis revealed associations between high-risk scores and immunosuppressive cell subsets, including Tregs and M2 macrophages. RT-qPCR confirmed elevated CD163 in AML (p < 0.001), while MRC1 showed no differential expression. This study establishes a TIME-centric prognostic model with clinical utility for risk stratification and therapeutic targeting in AML. Prospective validation and integration of advanced genomic technologies are warranted to refine its translational applicability.

摘要

肿瘤免疫微环境(TIME)是急性髓系白血病(AML)预后的关键决定因素。本研究旨在基于免疫相关的枢纽差异表达基因(hub-DEGs)开发一种预后模型,以优化风险分层并确定治疗靶点。使用ESTIMATE和xCell算法分析了149例TCGA-AML患者的转录组和临床数据,以推断免疫评分。确定了高/低免疫评分组之间的差异表达基因(DEGs),随后进行功能富集、蛋白质-蛋白质相互作用(PPI)网络分析以选择度数得分最高的hub-DEGs,并进行单变量Cox回归以确定预后基因。对562例GEO-AML患者进行了外部验证。通过对预后DEGs和hub-DEGs取交集来选择最终基因。接下来,使用这些基因创建了免疫预后模型(IPM)。使用xCell和CIBERSORT算法评估IPM与不同免疫细胞的相关性。最后,通过RT-PCR在40例AML样本和10例对照样本中对关键基因(CD163、MRC1)进行了实验验证。免疫评分与FAB分类相关(ESTIMATE:p值 = 1.4e - 8;xCell:p值 = 3.7e - 9)和总生存期相关(ESTIMATE:v = 0.041)。分析确定了680个富集于免疫反应途径的免疫相关DEGs。预后DEGs(n = 34)和hub-DEGs(n = 30)的交集产生了四个基因(CD163、IL10、MRC1、FCGR2B)。一个风险评分模型将患者分为高/低风险组,其生存期不同(p值 = 0.00072)。ROC分析显示了预测准确性(1至5年生存期的AUC为63.38 - 68.5%)。TIME分析揭示了高风险评分与免疫抑制细胞亚群之间的关联,包括调节性T细胞(Tregs)和M2巨噬细胞。RT-qPCR证实AML中CD163升高(p < 0.001),而MRC1未显示差异表达。本研究建立了一个以TIME为中心的预后模型,对AML的风险分层和治疗靶点具有临床实用性。有必要进行前瞻性验证并整合先进的基因组技术,以完善其转化适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/666c/12274339/4eb544377bea/41598_2025_3557_Figa_HTML.jpg

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