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比较转录组分析揭示了水杨酸介导的马铃薯关键基因和信号通路。

Comparative transcriptome analysis reveals key genes and signaling pathways mediated by salicylic acid in potato.

作者信息

Chen Aie, Zhang Beini, Wang Huijie, Wang Jiangqing, Wei Ji, Jia Yuxin, Wang Hongyang

机构信息

Yunnan Key Laboratory of Potato Biology, School of Life Science, Yunnan Normal University, Kunming, 650500, China.

Southwest United Graduate School, Kunming, 650092, China.

出版信息

BMC Plant Biol. 2025 Jul 21;25(1):937. doi: 10.1186/s12870-025-06975-z.

Abstract

BACKGROUND

Salicylic acid (SA) is a key phytohormone involved in regulating plant growth, development, and immune responses. While its signaling roles have been extensively characterized in model species, the molecular mechanisms and SA-responsive genes in potato remain largely uncharacterized.

OBJECTIVE

This study aims to elucidate the SA-mediated transcriptional network in potato by conducting a comparative transcriptomic analysis under treatments with exogenous SA and 1-aminobenzotriazole (ABT), a pan-selective cytochrome P450 inhibitor, that impairs enzymes required for salicylic acid (SA) biosynthesis.

RESULTS

RNA-seq analysis identified 6,668 and 3,815 differentially expressed genes (DEGs) under SA and ABT treatments, respectively, with 1,759 DEGs displaying inverse expression patterns between the two treatments. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses revealed that these DEGs are predominantly involved in phenylpropanoid biosynthesis, glutathione metabolism, plant hormone signal transduction, MAPK signaling, and plant-pathogen interactions. Exogenous SA activated genes associated with gibberellin, abscisic acid, brassinosteroid, and SA signaling pathways, while suppressing key jasmonic acid signaling genes, including JAR1 and MYC2. In addition, multiple PR1 genes and transcription factors from the WRKY, ERF, C2H2, MYB, and NAC families were strongly upregulated by SA. Functional validation using virus-induced gene silencing demonstrated that NbPAL1 and NbPAL2 are essential regulators of SA biosynthesis. Moreover, transcriptomic data revealed the robust induction of detoxification-related enzymes under SA treatment, including 19 glutathione S-transferases and 30 cytochrome P450 genes. Notably, two isoforms of CYP94B3, involved in JA-Ile hydroxylation, were induced by SA and repressed by ABT.

CONCLUSION

This study provides a comprehensive overview of SA-responsive gene expression in potato, uncovering key regulatory components and pathways within the SA signaling network. The findings offer valuable insights for future functional studies and genetic improvement strategies targeting SA-mediated disease resistance in potato.

摘要

背景

水杨酸(SA)是一种关键的植物激素,参与调节植物的生长、发育和免疫反应。虽然其信号传导作用已在模式物种中得到广泛表征,但马铃薯中的分子机制和SA响应基因在很大程度上仍未得到表征。

目的

本研究旨在通过对外源SA和1-氨基苯并三唑(ABT,一种泛选择性细胞色素P450抑制剂,可损害水杨酸(SA)生物合成所需的酶)处理下的马铃薯进行比较转录组分析,阐明SA介导的转录网络。

结果

RNA测序分析分别在SA和ABT处理下鉴定出6668个和3815个差异表达基因(DEG),其中1759个DEG在两种处理之间呈现相反的表达模式。基因本体(GO)和京都基因与基因组百科全书(KEGG)途径富集分析表明,这些DEG主要参与苯丙烷生物合成、谷胱甘肽代谢、植物激素信号转导、MAPK信号传导和植物-病原体相互作用。外源SA激活了与赤霉素、脱落酸、油菜素内酯和SA信号通路相关的基因,同时抑制了关键的茉莉酸信号基因,包括JAR1和MYC2。此外,多个PR1基因以及来自WRKY、ERF、C2H2、MYB和NAC家族的转录因子被SA强烈上调。使用病毒诱导基因沉默进行的功能验证表明,NbPAL1和NbPAL2是SA生物合成的关键调节因子。此外,转录组数据显示SA处理下解毒相关酶的强烈诱导,包括19种谷胱甘肽S-转移酶和30种细胞色素P450基因。值得注意的是,参与茉莉酸异亮氨酸羟基化的CYP94B3的两种同工型被SA诱导并被ABT抑制。

结论

本研究全面概述了马铃薯中SA响应基因的表达,揭示了SA信号网络中的关键调节成分和途径。这些发现为未来针对SA介导的马铃薯抗病性的功能研究和遗传改良策略提供了有价值的见解。

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