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正向选择驱动胸喙亚目(昆虫纲:半翅目)线粒体基因重排

Positive Selection Drives Mitochondrial Gene Rearrangement in Sternorrhyncha (Insecta: Hemiptera).

作者信息

Zhao Tian-You, Wei Jiu-Feng, Li Cai-Feng, Chen Ya-Nan, Lü Liang, Wang Fang

机构信息

Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Collaborative Innovation Center for Eco-Environment, Hebei Key Laboratory of Animal Physiology, Biochemistry and Molecular Biology, College of Life Sciences Hebei Normal University Shijiazhuang Hebei China.

Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management College of Plant Protection China Agricultural University Beijing China.

出版信息

Ecol Evol. 2025 Jul 20;15(7):e71789. doi: 10.1002/ece3.71789. eCollection 2025 Jul.

DOI:10.1002/ece3.71789
PMID:40692968
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12277048/
Abstract

Sternorrhyncha, a suborder of Hemiptera, comprises sap-feeding insects with piercing-sucking mouthparts, most of which are important agricultural and forestry pests, including aphids, psyllids, whiteflies, and scale insects. While the mitochondrial genome is a highly accessible molecular source for high-level and large-scale phylogenetic studies, a comprehensive mitochondrial phylogenomic investigation of Sternorrhyncha has been lacking. This deficiency is primarily attributable to the challenges associated with obtaining mitochondrial genomes from Coccoidea. We have constructed the largest mitochondrial dataset for Sternorrhyncha to establish phylogenetic relationships, to examine the interrelationships, and to assess the phylogenetic results. Based on phylogenetic trees and mitogenomic gene arrangement synapomorphies, our findings confirm a sister-group relationship between Coccoidea and Aphidoidea, and demonstrate the affiliation of Aclerdidae with Coccidae. Additionally, we have examined the mitochondrial gene rearrangements in Sternorrhyncha. Mitochondrial genes in Coccoidea and Aleyrodoidea display a notable prevalence of translocation and a high proportion of positive selection pressures, which correlates with their large species diversity. Conversely, most aphid genes are under negative selection pressure, and pairwise identity analysis reveals relatively modest low variation among aphid lineages, highlighting a paradox of species diversification underlain by conserved mitochondrial genomic changes.

摘要

胸喙亚目是半翅目的一个亚目,包含以刺吸式口器吸食汁液的昆虫,其中大多数是重要的农林害虫,包括蚜虫、木虱、粉虱和蚧壳虫。虽然线粒体基因组是进行高级别大规模系统发育研究的极易获取的分子来源,但目前缺乏对胸喙亚目的全面线粒体系统基因组学研究。这一不足主要归因于从蚧总科获取线粒体基因组所面临的挑战。我们构建了胸喙亚目最大的线粒体数据集,以建立系统发育关系、研究相互关系并评估系统发育结果。基于系统发育树和线粒体基因组基因排列共衍征,我们的研究结果证实了蚧总科和蚜总科之间的姐妹群关系,并证明了粉蚧科与蚧科的亲缘关系。此外,我们还研究了胸喙亚目的线粒体基因重排。蚧总科和粉虱总科的线粒体基因显示出明显的易位普遍性和较高比例的正选择压力,这与其丰富的物种多样性相关。相反,大多数蚜虫基因处于负选择压力之下,成对同一性分析显示蚜虫谱系之间的变异相对较小,这凸显了由保守的线粒体基因组变化所支撑的物种多样化的悖论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb91/12277048/b79bec46a140/ECE3-15-e71789-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb91/12277048/7cc32159f932/ECE3-15-e71789-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb91/12277048/27979955f911/ECE3-15-e71789-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb91/12277048/b79bec46a140/ECE3-15-e71789-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb91/12277048/7cc32159f932/ECE3-15-e71789-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb91/12277048/27979955f911/ECE3-15-e71789-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb91/12277048/b79bec46a140/ECE3-15-e71789-g004.jpg

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本文引用的文献

1
Purifying selection drove the adaptation of mitochondrial genes along with correlation of gene rearrangements and evolutionary rates in two subfamilies of Whitefly (Insecta: Hemiptera).净化选择驱动了线粒体基因的适应,以及两个粉虱亚科(昆虫纲:半翅目)中基因重排和进化速率的相关性。
Funct Integr Genomics. 2024 Jul 8;24(4):121. doi: 10.1007/s10142-024-01400-4.
2
Ultraconserved elements from transcriptome and genome data provide insight into the phylogenomics of Sternorrhyncha (Insecta: Hemiptera).基于转录组和基因组数据的超保守元件为半翅目(昆虫纲:半翅目)的系统基因组学研究提供了新视角。
Cladistics. 2024 Oct;40(5):496-509. doi: 10.1111/cla.12585. Epub 2024 May 29.
3
Aphid populations are frequently infected with facultative endosymbionts.
蚜虫种群经常受到兼性内共生体的感染。
Environ Microbiol. 2024 Mar;26(3):e16599. doi: 10.1111/1462-2920.16599.
4
First complete mitochondrial genome of the tribe Coccini (Hemiptera, Coccomorpha, Coccidae) and its phylogenetic implications.瓢虫族(半翅目,蚧总科,蚧科)首个完整线粒体基因组及其系统发育意义
Zookeys. 2023 Sep 26;1180:333-354. doi: 10.3897/zookeys.1180.109116. eCollection 2023.
5
Relaxed purifying selection pressure drives accelerated and dynamic gene rearrangements in thrips (Insecta: Thysanoptera) mitochondrial genomes.松弛的净化选择压力驱动缨翅目昆虫(昆虫纲:缨翅目)线粒体基因组中的加速和动态基因重排。
Int J Biol Macromol. 2023 Dec 31;253(Pt 2):126742. doi: 10.1016/j.ijbiomac.2023.126742. Epub 2023 Sep 7.
6
Four Most Pathogenic Superfamilies of Insect Pests of Suborder Sternorrhyncha: Invisible Superplunderers of Plant Vitality.粉虱亚目害虫的四个最具致病性的超科:植物生命力的无形超级掠夺者
Insects. 2023 May 13;14(5):462. doi: 10.3390/insects14050462.
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Phylogenetic Implications of Mitogenomic Sequences and Gene Rearrangements of Scale Insects (Hemiptera, Coccoidea).蚧壳虫(半翅目,蚧总科)线粒体基因组序列及基因重排的系统发育意义
Insects. 2023 Mar 5;14(3):257. doi: 10.3390/insects14030257.
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Mitochondrial genomes of soft scales (Hemiptera: Coccidae): features, structures and significance.软蚧(半翅目:盾蚧科)的线粒体基因组:特征、结构和意义。
BMC Genomics. 2023 Jan 21;24(1):37. doi: 10.1186/s12864-023-09131-9.
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Integrated phylogenomics and fossil data illuminate the evolution of beetles.整合系统发育基因组学和化石数据揭示了甲虫的进化历程。
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When did the ancestor of true bugs become stinky? Disentangling the phylogenomics of Hemiptera-Heteroptera.真正的蝽类昆虫的祖先何时开始产生臭味?解析半翅目-异翅亚目的系统发育基因组学。
Cladistics. 2019 Feb;35(1):42-66. doi: 10.1111/cla.12232. Epub 2017 Dec 19.