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溶液中单链DNA分子的过量极化率:极化连续介质模型中的线性响应理论及其在生物传感中的应用

The Excess Polarizability of Single-Stranded DNA Molecules in Solution: A Linear Response Theory in the Polarizable Continuum Model with an Application to Biosensing.

作者信息

Cammi Roberto

机构信息

Dipartimento di Scienze Chimiche, della Vita e della Sostenibilitá Ambientale, Universitá degli Studi di Parma, Parco Area delle Scienze 11/a, Parma 43124, Italy.

出版信息

J Phys Chem A. 2025 Aug 7;129(31):7130-7139. doi: 10.1021/acs.jpca.5c03229. Epub 2025 Jul 25.

Abstract

The excess polarizability of a molecular solute describes the interaction energy between a molecular solute and a macroscopic optical field that polarizes the solute itself, as compared to the same interaction process involving solvent molecules. The excess polarizability is involved in the physical mechanism that triggers the signals in the whispering gallery mode (WGM), a biosensing technique (denoted as WGM) for detecting biomolecules. The interpretation of the WGM signals requires information on the excess polarizability of the biomolecule of interest, which, until now, could be obtained from experimental measurements of the refractive index of solutions. Here, we present a quantum chemical theory for determining the excess polarizability using the effective linear response theory in the polarizable continuum model (PCM-eLRT) for solvation. As a proof-of-concept, the PCM-eLRT is applied at the TD-DFT level of electronic structure methodology to the calculation of the excess polarizability of single-stranded DNA molecules constituted up to 14-mer oligonucleotides, showing remarkable agreement with available experimental data.

摘要

与涉及溶剂分子的相同相互作用过程相比,分子溶质的过量极化率描述了分子溶质与使溶质本身极化的宏观光场之间的相互作用能。过量极化率参与了触发回音壁模式(WGM)信号的物理机制,WGM是一种用于检测生物分子的生物传感技术。对WGM信号的解释需要有关目标生物分子过量极化率的信息,到目前为止,这可以从溶液折射率的实验测量中获得。在这里,我们提出了一种量子化学理论,用于在极化连续介质模型(PCM-eLRT)的有效线性响应理论中确定过量极化率以进行溶剂化。作为概念验证,PCM-eLRT在电子结构方法的TD-DFT水平上应用于计算由多达14聚体寡核苷酸构成的单链DNA分子的过量极化率,与现有实验数据显示出显著的一致性。

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