Gabrieli Andrea, Sant Marco, Izadi Saeed, Shabane Parviz Seifpanahi, Onufriev Alexey V, Suffritti Giuseppe B
Dipartimento di Chimica e Farmacia, Università degli Studi di Sassari, Via Vienna 2, 07100 Sassari, Italy.
Department of Biomedical Engineering and Mechanics, Virginia Tech, Blacksburg, Virginia 24060, United States.
Front Phys (Beijing). 2018 Feb;13(1). doi: 10.1007/s11467-017-0693-7. Epub 2017 Dec 7.
Classical molecular dynamics simulations were performed to study the high-temperature (above 300 K) dynamic behavior of bulk water, specifically the behavior of the diffusion coefficient,hydrogen bond, and nearest-neighbor lifetimes. Two water potentials were compared: the recently proposed "globally optimal" point charge (OPC) model and the well-known TIP4P-Ew model. By considering the Arrhenius plots of the computed inverse diffusion coefficient and rotational relaxation constants, a crossover from Vogel-Fulcher-Tammann behavior to a linear trend with increasing temperature was detected at and for the OPC and TIP4P-Ew models, respectively. Experimentally, the crossover point was previously observed at . We also verified that for the coefficient of thermal expansion , the isobaric curves cross at about the same as in the experiment. The lifetimes of water hydrogen bonds and of the nearest neighbors were evaluated and were found to cross near , where the lifetimes are about 1 ps. For , hydrogen bonds persist longer than nearest neighbors, suggesting that the hydrogen bonding network dominates the water structure at , whereas for , water behaves more like a simple liquid. The fact that falls within the biologically relevant temperature range is a strong motivation for further analysis of the phenomenon and its possible consequences for biomolecular systems.
进行了经典分子动力学模拟,以研究体相水在高温(高于300K)下的动力学行为,特别是扩散系数、氢键和最近邻寿命的行为。比较了两种水势:最近提出的“全局最优”点电荷(OPC)模型和著名的TIP4P-Ew模型。通过考虑计算得到的逆扩散系数和旋转弛豫常数的阿累尼乌斯图,分别在OPC模型和TIP4P-Ew模型中检测到,随着温度升高,从Vogel-Fulcher-Tammann行为到线性趋势的转变,转变温度分别为 和 。实验上,之前在 观察到了转变点。我们还验证了,对于热膨胀系数 ,等压 曲线在与实验中大致相同的 处相交。评估了水氢键和最近邻的寿命,发现它们在 附近相交,此时寿命约为1皮秒。对于 ,氢键持续时间比最近邻更长,这表明在 时氢键网络主导了水的结构,而对于 ,水的行为更像一种简单液体。 处于生物学相关温度范围内这一事实,有力地推动了对该现象及其对生物分子系统可能产生的后果进行进一步分析。