Paoletti Francesca, Goričan Tjaša, Cassetta Alberto, Grdadolnik Jože, Toporash Mykola, Lamba Doriano, Golič Grdadolnik Simona, Covaceuszach Sonia
Institute of Crystallography-C.N.R.-Trieste Outstation, 34149 Trieste, Italy.
Laboratory for Molecular Structural Dynamics, Theory Department, National Institute of Chemistry, 1001 Ljubljana, Slovenia.
Molecules. 2025 Jul 19;30(14):3030. doi: 10.3390/molecules30143030.
The Nerve Growth Factor (NGF) is essential for neuronal survival and function and represents a key therapeutic target for pain and inflammation-related disorders, as well as for neurodegenerative diseases. Small-molecule antagonists of human NGF (hNGF) offer advantages over monoclonal antibodies, including oral availability and reduced immunogenicity. However, their development is often hindered by solubility challenges, necessitating the use of solvents like dimethyl sulfoxide (DMSO). This study investigates whether DMSO directly interacts with hNGF and affects its receptor-binding properties. Integrative/hybrid computational and experimental biophysical approaches were used to assess DMSO-NGF interaction by combining machine-learning tools and Nuclear Magnetic Resonance (NMR), Fourier Transform Infrared (FT-IR) spectroscopy, Differential Scanning Fluorimetry (DSF) and Grating-Coupled Interferometry (GCI). These techniques evaluated binding affinity, conformational stability, and receptor-binding dynamics. Our findings demonstrate that DMSO binds hNGF with low affinity in a specific yet non-disruptive manner. Importantly, DMSO does not induce significant conformational changes in hNGF nor affect its interactions with its receptors. These results highlight the importance of considering solvent-protein interactions in drug discovery, as these low-affinity yet specific interactions can affect experimental outcomes and potentially alter the small molecules binding to the target proteins. By characterizing DMSO-NGF interactions, this study provides valuable insights for the development of NGF-targeting small molecules, supporting their potential as effective alternatives to monoclonal antibodies for treating pain, inflammation, and neurodegenerative diseases.
神经生长因子(NGF)对神经元的存活和功能至关重要,是疼痛、炎症相关疾病以及神经退行性疾病的关键治疗靶点。人NGF(hNGF)的小分子拮抗剂比单克隆抗体具有优势,包括口服可用性和降低的免疫原性。然而,它们的开发常常受到溶解性挑战的阻碍,因此需要使用二甲基亚砜(DMSO)等溶剂。本研究调查了DMSO是否直接与hNGF相互作用并影响其受体结合特性。通过结合机器学习工具和核磁共振(NMR)、傅里叶变换红外(FT-IR)光谱、差示扫描荧光法(DSF)和光栅耦合干涉术(GCI),采用综合/混合计算和实验生物物理方法评估DMSO与NGF的相互作用。这些技术评估了结合亲和力、构象稳定性和受体结合动力学。我们的研究结果表明,DMSO以特定但非破坏性的方式与hNGF低亲和力结合。重要的是,DMSO不会在hNGF中诱导显著的构象变化,也不会影响其与受体的相互作用。这些结果突出了在药物发现中考虑溶剂 - 蛋白质相互作用的重要性,因为这些低亲和力但特定的相互作用会影响实验结果,并可能改变与靶蛋白结合的小分子。通过表征DMSO与NGF的相互作用,本研究为开发靶向NGF的小分子提供了有价值的见解,支持它们作为治疗疼痛、炎症和神经退行性疾病的单克隆抗体有效替代品的潜力。