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基因的功能鉴定与转录活性分析

Functional Identification and Transcriptional Activity Analysis of Gene.

作者信息

Sun Meng, Ma Qian, Wang Xueqi, Guo Jialiang, Wang Jiaxuan, Zhang Dongrui, Tkachenko Kirill, Wang Wenzhong, Chang Ying

机构信息

College of Life Sciences, Northeast Agricultural University, Harbin 150030, China.

Peter the Great Botanical Garden, V.L. Komarov Botanical Institute of the Russian Academy of Sciences, Saint-Petersburg 197376, Russia.

出版信息

Plants (Basel). 2025 Jul 15;14(14):2190. doi: 10.3390/plants14142190.

DOI:10.3390/plants14142190
PMID:40733426
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12301065/
Abstract

(L.) Schott synthesizes volatile sesquiterpenes through the mevalonate pathway (MVA), in which 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) serves as the key rate-limiting enzyme. Although HMGR plays a crucial role in terpenoid biosynthesis, its functional characteristics in and its involvement in stress responses remain unclear. This study identified three genes () from the transcriptome data of . Bioinformatics analysis revealed that the encoded proteins are localized to the endoplasmic reticulum and share high sequence similarity with fern homologs. Under abiotic stress conditions, s exhibited differential expression patterns, with marked upregulation under salt and drought stress. To validate the functions of these genes, we generated transgenic L. plants overexpressing s. Compared with wild-type controls, the transgenic lines showed enhanced tolerance to drought and heat stress. Promoter analysis identified functional regulatory regions controlling expression, and co-expression network analysis predicted 21 potential transcriptional regulators. This study validates the function of in a heterologous system and provides candidate genes for improving stress resistance in plants.

摘要

(L.)肖特通过甲羟戊酸途径(MVA)合成挥发性倍半萜,其中3-羟基-3-甲基戊二酰辅酶A还原酶(HMGR)是关键的限速酶。尽管HMGR在萜类生物合成中起关键作用,但其在[植物名称未给出]中的功能特性及其参与应激反应的情况仍不清楚。本研究从[植物名称未给出]的转录组数据中鉴定出三个[基因名称未给出]基因。生物信息学分析表明,编码的蛋白质定位于内质网,与蕨类植物同源物具有高度序列相似性。在非生物胁迫条件下,[基因名称未给出]表现出差异表达模式,在盐胁迫和干旱胁迫下显著上调。为了验证这些基因的功能,我们构建了过表达[基因名称未给出]的转基因[植物名称未给出]植株。与野生型对照相比,转基因株系对干旱和热胁迫的耐受性增强。启动子分析确定了控制[基因名称未给出]表达的功能调控区域,共表达网络分析预测了21个潜在的转录调节因子。本研究在异源系统中验证了[基因名称未给出]的功能,并为提高植物抗逆性提供了候选基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/f10485f9efad/plants-14-02190-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/dd5a973c11ba/plants-14-02190-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/f2a6ccf35778/plants-14-02190-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/7c1fb16f3b08/plants-14-02190-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/fee07ff3b3d2/plants-14-02190-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/dd14cb2d0e26/plants-14-02190-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/9b1295071bdc/plants-14-02190-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/cf33f8383137/plants-14-02190-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/09724eb5e454/plants-14-02190-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/b313836a13f5/plants-14-02190-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/f10485f9efad/plants-14-02190-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/dd5a973c11ba/plants-14-02190-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/f2a6ccf35778/plants-14-02190-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/7c1fb16f3b08/plants-14-02190-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/fee07ff3b3d2/plants-14-02190-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/dd14cb2d0e26/plants-14-02190-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/9b1295071bdc/plants-14-02190-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/cf33f8383137/plants-14-02190-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/09724eb5e454/plants-14-02190-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/b313836a13f5/plants-14-02190-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f0de/12301065/f10485f9efad/plants-14-02190-g010.jpg

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本文引用的文献

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Comprehensive genome-wide analysis of the gene family of and functional validation of under different abiotic stresses.对[具体基因家族名称]基因家族进行全基因组综合分析以及在不同非生物胁迫下的功能验证。 (原文中“of the gene family of ”表述不完整,推测这里应该有具体的基因家族名称)
Front Plant Sci. 2025 Feb 20;16:1455592. doi: 10.3389/fpls.2025.1455592. eCollection 2025.
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Integrated Metabolomics and Transcriptomics Analysis Reveals New Insights into Triterpene Biosynthesis in .综合代谢组学和转录组学分析揭示了……中三萜生物合成的新见解。 (原文句末不完整)
Plants (Basel). 2024 Jun 8;13(12):1600. doi: 10.3390/plants13121600.
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HMGR and CHS gene cloning, characterizations and tissue-specific expressions in Polygala tenuifolia Willd.
远志 HMGR 和 CHS 基因的克隆、鉴定及组织特异性表达
PLoS One. 2024 Mar 25;19(3):e0300895. doi: 10.1371/journal.pone.0300895. eCollection 2024.
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Transcription factor CsTT8 promotes fruit coloration by positively regulating the methylerythritol 4-phosphate pathway and carotenoid biosynthesis pathway in citrus ( spp.).转录因子CsTT8通过正向调控柑橘中的甲基赤藓糖醇4-磷酸途径和类胡萝卜素生物合成途径来促进果实着色。
Hortic Res. 2023 Oct 10;10(11):uhad199. doi: 10.1093/hr/uhad199. eCollection 2023 Nov.
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TBtools-II: A "one for all, all for one" bioinformatics platform for biological big-data mining.TBtools-II:一个“一专多能”的生物信息学大数据挖掘平台。
Mol Plant. 2023 Nov 6;16(11):1733-1742. doi: 10.1016/j.molp.2023.09.010. Epub 2023 Sep 22.
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Genome-Wide Comparison and Functional Characterization of Gene Family Associated with Shikonin Biosynthesis in .与紫草素生物合成相关的基因家族的全基因组比较及功能表征
Int J Mol Sci. 2023 Aug 7;24(15):12532. doi: 10.3390/ijms241512532.
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GFAP: ultrafast and accurate gene functional annotation software for plants.GFAP:用于植物的超快速且准确的基因功能注释软件。
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Novel mechanisms for the synthesis of important secondary metabolites in seed revealed by multi-omics data.多组学数据揭示种子中重要次生代谢产物合成的新机制。
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Combined analysis of transcriptomics and metabolomics revealed complex metabolic genes for diterpenoids biosynthesis in different organs of .转录组学和代谢组学的联合分析揭示了[植物名称]不同器官中参与二萜类生物合成的复杂代谢基因。 (你提供的原文中“of”后面缺少具体内容,我根据常见情况补充了“[植物名称]”,你可根据实际情况修改。)
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Front Bioeng Biotechnol. 2023 Apr 27;11:1188461. doi: 10.3389/fbioe.2023.1188461. eCollection 2023.