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主动学习用于预测新冠病毒2型急性后遗症患者的严重程度

Active Learning for Forecasting Severity among Patients with Post Acute Sequelae of SARS-CoV-2.

作者信息

Wang Jing, Sra Amar, Weiss Jeremy C

机构信息

National Library of Medicine, Bethesda, MD.

The George Washington University, Washington, DC.

出版信息

ArXiv. 2025 Jun 11:arXiv:2506.22444v1.

PMID:40735095
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12306820/
Abstract

The long-term effects of Postacute Sequelae of SARS-CoV-2, known as PASC, pose a significant challenge to healthcare systems worldwide. Accurate identification of progression events-such as hospitalization and reinfection-is essential for effective patient management and resource allocation. However, traditional models trained on structured data struggle to capture the nuanced progression of PASC. In this study, we introduce the first publicly available cohort of 18 PASC patients, with text time series features based on Large Language Model Llama-3.1-70B-Instruct and clinical risk annotated by clinical expert. We propose an Active Attention Network to predict the clinical risk and identify progression events related to the risk. By integrating human expertise with active learning, we aim to enhance clinical risk prediction accuracy and enable progression events identification with fewer number of annotation. The ultimate goal is to improves patient care and decision-making for SARS-CoV-2 patient.

摘要

新冠病毒急性后遗症(PASC)的长期影响给全球医疗系统带来了重大挑战。准确识别病情进展事件,如住院和再次感染,对于有效的患者管理和资源分配至关重要。然而,基于结构化数据训练的传统模型难以捕捉PASC细微的病情进展。在本研究中,我们引入了首个公开可用的由18名PASC患者组成的队列,其具有基于大语言模型Llama-3.1-70B-Instruct的文本时间序列特征,并由临床专家标注了临床风险。我们提出了一种主动注意力网络来预测临床风险并识别与风险相关的病情进展事件。通过将人类专业知识与主动学习相结合,我们旨在提高临床风险预测的准确性,并以更少的标注数量实现病情进展事件的识别。最终目标是改善对新冠病毒患者的护理和决策。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b12d/12306820/62325c863388/nihpp-2506.22444v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b12d/12306820/3a782b69415f/nihpp-2506.22444v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b12d/12306820/62325c863388/nihpp-2506.22444v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b12d/12306820/3a782b69415f/nihpp-2506.22444v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b12d/12306820/62325c863388/nihpp-2506.22444v1-f0002.jpg

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本文引用的文献

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A Large-Language Model Framework for Relative Timeline Extraction from PubMed Case Reports.一种用于从PubMed病例报告中提取相对时间线的大语言模型框架。
AMIA Jt Summits Transl Sci Proc. 2025 Jun 10;2025:598-606. eCollection 2025.
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Nat Commun. 2023 Apr 7;14(1):1948. doi: 10.1038/s41467-023-37653-z.
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Cell. 2022 Mar 3;185(5):881-895.e20. doi: 10.1016/j.cell.2022.01.014. Epub 2022 Jan 25.