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通过16S rDNA测序和生物信息学技术对人类胰腺癌微生物组进行系统发育特征研究。

An investigation for phylogenetic characterization of human pancreatic cancer microbiome by 16S rDNA sequencing and bioinformatics techniques.

作者信息

Hunter Colby, Dia Khadimou, Boykins Julia, Perry Karrington, Banerjee Narendra, Cuffee Jazmine, Armstrong Erik, Morgan Gabrielle, Banerjee Hirendra Nath, Banerjee Anasua, Bhattacharya Santanu

机构信息

Department of Natural Sciences, Elizabeth City State University Campus of The University of North Carolina, Elizabeth City, NC, United States.

Department of Biochemistry, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, United States.

出版信息

J Solid Tumors. 2024;14(1):1-9. doi: 10.5430/jst.v14n1p1. Epub 2024 Jun 14.

Abstract

Pancreatic cancer is a significant public health concern, with increasing incidence rates and limited treatment options. Recent studies have highlighted the role of the human microbiome, particularly the gut microbiota, in the development and progression of this disease. Microbial dysbiosis, characterized by alterations in the composition and function of the gut microbiota, has been implicated in pancreatic carcinogenesis through mechanisms involving chronic inflammation, immune dysregulation, and metabolic disturbances. Researchers have identified specific microbial signatures associated with pancreatic cancer, offering potential biomarkers for early detection and prognostication. By leveraging advanced sequencing and bioinformatics tools, scientists have delineated differences in the gut microbiota between pancreatic cancer patients and healthy individuals, providing insights into disease pathogenesis and potential diagnostic strategies. Moreover, the microbiome holds promise as a therapeutic target in pancreatic cancer treatment. Interventions aimed at modulating the microbiome, such as probiotics, prebiotics, and fecal microbiota transplantation, have demonstrated potential in enhancing the efficacy of existing cancer therapies, including chemotherapy and immunotherapy. These approaches can influence immune responses, alter tumor microenvironments, and sensitize tumors to treatment, offering new avenues for improving patient outcomes and overcoming therapeutic resistance. Overall, understanding the complex interplay between the microbiome and pancreatic cancer is crucial for advancing our knowledge of disease mechanisms and identifying innovative therapeutic strategies. Here we report phylogenetic analysis of the 16S rDNA microbial sequences of the pancreatic cancer mice microbiome and corresponding age matched healthy mice microbiome. We successfully identified differentially abundant microbiota in pancreatic cancer.

摘要

胰腺癌是一个重大的公共卫生问题,其发病率不断上升且治疗选择有限。最近的研究强调了人类微生物组,特别是肠道微生物群,在这种疾病的发生和发展中的作用。微生物失调以肠道微生物群的组成和功能改变为特征,通过涉及慢性炎症、免疫失调和代谢紊乱的机制与胰腺癌的发生有关。研究人员已经确定了与胰腺癌相关的特定微生物特征,为早期检测和预后提供了潜在的生物标志物。通过利用先进的测序和生物信息学工具,科学家们已经描绘了胰腺癌患者和健康个体之间肠道微生物群的差异,为疾病发病机制和潜在的诊断策略提供了见解。此外,微生物组有望成为胰腺癌治疗的一个治疗靶点。旨在调节微生物组的干预措施,如益生菌、益生元、和粪便微生物群移植,已显示出在提高现有癌症治疗(包括化疗和免疫治疗)疗效方面的潜力。这些方法可以影响免疫反应、改变肿瘤微环境,并使肿瘤对治疗敏感,为改善患者预后和克服治疗耐药性提供了新途径。总的来说,了解微生物组与胰腺癌之间的复杂相互作用对于推进我们对疾病机制的认识和确定创新治疗策略至关重要。在这里,我们报告了对胰腺癌小鼠微生物组和相应年龄匹配的健康小鼠微生物组的16S rDNA微生物序列的系统发育分析。我们成功地鉴定出胰腺癌中差异丰富的微生物群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/979d/12309466/7c70c70335e7/nihms-2035159-f0001.jpg

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