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使用TimsTOF pro质谱仪上的数据非依赖型采集数据集对原发性开角型青光眼患者的房水蛋白质组进行全面表征。

Comprehensive characterization of human aqueous humor proteomes from primary open-angle glaucoma using data-independent acquisition dataset on a TimsTOF pro mass spectrometer.

作者信息

Xiao Hu, Lu Da Qian, Cheung Jimmy Ka-Wai, Sze Ying Hon, Bian Jing Fang, Do Chi-Wai, Zhou Lei, Xing Xiao Li, Lam Thomas Chuen

机构信息

The Hong Kong Polytechnic University Shenzhen Research Institute, Shenzhen, Guangdong, PR China.

Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong.

出版信息

Data Brief. 2025 Jul 11;61:111881. doi: 10.1016/j.dib.2025.111881. eCollection 2025 Aug.

DOI:10.1016/j.dib.2025.111881
PMID:40756422
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12318253/
Abstract

Primary open-angle glaucoma (POAG) is the foremost cause of irreversible visual impairment, attributed to a complex array of ocular diseases. The lack of reliable prognostic indicators necessitates the development of biomarkers that can be used to detect and monitor glaucoma early in its course. In this study, human aqueous humor databases dedicated to advanced and not advanced POAG from Chinese were compiled to facilitate research on POAG, using advanced label-free quantitative proteomics technology by a TimsTOF Pro mass spectrometer. Proteins and peptides were identified and quantified by DIA-NN bioinformatics. All mass spectrometry data were deposited in the ProteomeXchange Consortium via the PRIDE partner (https://www.ebi.ac.uk/pride) with the dataset identifier PRIDE: PXD060484.

摘要

原发性开角型青光眼(POAG)是不可逆视力损害的首要原因,这归因于一系列复杂的眼部疾病。由于缺乏可靠的预后指标,因此有必要开发可用于在青光眼病程早期进行检测和监测的生物标志物。在本研究中,利用TimsTOF Pro质谱仪的先进无标记定量蛋白质组学技术,编制了来自中国的、针对晚期和非晚期POAG的人房水数据库,以促进对POAG的研究。通过DIA-NN生物信息学对蛋白质和肽进行鉴定和定量。所有质谱数据均通过PRIDE合作伙伴(https://www.ebi.ac.uk/pride)存入蛋白质组交换联盟,数据集标识符为PRIDE:PXD060484。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/b8e78ee239fa/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/65abb3d1a331/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/0bbf711b8903/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/fbb2ef09e087/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/b8e78ee239fa/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/65abb3d1a331/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/0bbf711b8903/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/fbb2ef09e087/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8d6/12318253/b8e78ee239fa/gr4.jpg

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Biofactors. 2024 Nov-Dec;50(6):1220-1235. doi: 10.1002/biof.2079. Epub 2024 May 31.
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Advances in aqueous humor proteomics for biomarker discovery and disease mechanisms exploration: a spotlight on primary open angle glaucoma.房水蛋白质组学在生物标志物发现和疾病机制探索方面的进展:聚焦原发性开角型青光眼
Front Mol Neurosci. 2024 Apr 24;17:1397461. doi: 10.3389/fnmol.2024.1397461. eCollection 2024.
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Aqueous humour protein dysregulation in Asian eyes with primary open angle glaucoma.
亚洲原发性开角型青光眼眼中房水蛋白质的失调。
Exp Eye Res. 2024 Jun;243:109887. doi: 10.1016/j.exer.2024.109887. Epub 2024 Apr 10.
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Identification and validation of autophagy-related genes in primary open-angle glaucoma.原发性开角型青光眼自噬相关基因的鉴定和验证。
BMC Med Genomics. 2023 Nov 15;16(1):287. doi: 10.1186/s12920-023-01722-5.
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MS-DAP Platform for Downstream Data Analysis of Label-Free Proteomics Uncovers Optimal Workflows in Benchmark Data Sets and Increased Sensitivity in Analysis of Alzheimer's Biomarker Data.MS-DAP 平台用于无标记蛋白质组学下游数据分析,在基准数据集的分析中揭示了最佳工作流程,并提高了阿尔茨海默病生物标志物数据的分析灵敏度。
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