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通过基于成对势的高通量方法绘制离子表面的吸附情况。

Mapping adsorption on ionic surfaces via a pairwise potential-based high-throughput approach.

作者信息

Mates-Torres Eric, Ugliengo Piero, Rimola Albert

机构信息

Departament de Química Universitat Autònoma de Barcelona Campus de la UAB 08193Bellaterra Catalonia Spain.

Dipartimento di Chimica and Centre for Nanomaterials for Industry and Sustainability (NIS) Università degli Studi di Torino via P. Giuria 7 TorinoI-10125 Italy.

出版信息

J Appl Crystallogr. 2025 Jul 16;58(Pt 4):1462-1468. doi: 10.1107/S1600576725005230. eCollection 2025 Aug 1.

Abstract

Understanding molecular adsorption on ionic surfaces is crucial for a variety of chemical applications, from heterogeneous catalysis to prebiotic chemistry. Traditional approaches for identifying adsorption sites often rely on computationally expensive methods such as density functional theory (DFT), which limits their applicability to chemically complex surfaces. In this work, we propose an automated high-throughput approach to obtain a complete picture of the adsorbate-surface interaction by means of pairwise Coulomb and Lennard-Jones potentials. Using a grid-based surface scan to calculate per-site potential energies of adsorption, this method efficiently predicts global adsorption minima and all potential binding modes of a surface-adsorbate system, with the only user input being the surface CIF. Our approach is validated by studying formaldehyde (HCO) adsorption on forsterite (MgSiO), a common silicate, and l-cysteine adsorption on cadmium sulfide (CdS). The predicted adsorption configurations and energies are compared with DFT values in the literature, showing good agreement and confirming the accuracy of our method. Our workflow provides a rapid means of exploring large configurational spaces and identifying stable adsorption structures, making it particularly useful for complex surfaces with multiple interaction sites. The simplicity of the model, combined with its accuracy, suggest it could be employed to discover new catalytic pathways on chemically complex ionic surfaces.

摘要

理解离子表面上的分子吸附对于从多相催化到益生元化学等各种化学应用至关重要。传统的确定吸附位点的方法通常依赖于计算成本高昂的方法,如密度泛函理论(DFT),这限制了它们在化学复杂表面上的适用性。在这项工作中,我们提出了一种自动化的高通量方法,通过成对的库仑势和 Lennard-Jones 势来全面了解吸附质 - 表面相互作用。该方法使用基于网格的表面扫描来计算每个位点的吸附势能,能够有效地预测表面 - 吸附质系统的全局吸附最小值和所有潜在的结合模式,唯一需要用户输入的是表面 CIF。我们通过研究甲醛(HCO)在常见硅酸盐镁橄榄石(MgSiO)上的吸附以及 L-半胱氨酸在硫化镉(CdS)上的吸附来验证我们的方法。将预测的吸附构型和能量与文献中的 DFT 值进行比较,结果显示出良好的一致性,证实了我们方法的准确性。我们的工作流程提供了一种快速探索大构型空间并识别稳定吸附结构的方法,对于具有多个相互作用位点的复杂表面特别有用。该模型的简单性及其准确性表明,它可用于发现化学复杂离子表面上的新催化途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b42/12321012/b689f13ecd0a/j-58-01462-fig1.jpg

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