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禾本科植物中SPEECHLESS基因的复制扩展了气孔发育环境调控的潜力。

SPEECHLESS duplication in grasses expands potential for environmental regulation of stomatal development.

作者信息

Erberich Joel M, Bennett Britney, Bergmann Dominique C

机构信息

Department of Biology, Stanford University, Stanford, CA 94305, USA.

Howard Hughes Medical Institute, Stanford, CA 94305, USA.

出版信息

bioRxiv. 2025 Jul 30:2025.07.29.667563. doi: 10.1101/2025.07.29.667563.

DOI:10.1101/2025.07.29.667563
PMID:40771893
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12327695/
Abstract

Plants acquire atmospheric carbon dioxide for photosynthesis while minimizing water loss and do so by regulating stomatal function and development. The ancestral basic helix-loop-helix transcription factor (TF) gene that drove stomata production in early land plants diversified in sequence and function to become paralogs SPEECHLESS (SPCH), MUTE, and FAMA. Extant angiosperms use these three TFs and their heterodimer partners to regulate stomatal cell identities. Grasses exhibit a particularly interesting set of duplications and losses of SPCH. Using phylogenetic methods, we tracked the duplication of SPCH to the Poaceae-specific whole genome duplication and demonstrated that both paralogs remain under selection. By following responses to environmental change in plants bearing mutations in either or we reveal paralog-specific divergence in response to light or temperature shifts, and further show this behavior is conserved paralogs. Plausible molecular mechanisms underpinning paralog divergence, and cellular mechanisms driving the stomatal phenotypes are supported by analyses of RNA and protein expression in and sequence variation among grasses. These studies suggest ways in which a duplication of a key stomatal regulator enables adaptation and could inform genetic strategies to mitigate anticipated stressors in agronomically important plants.

摘要

植物在进行光合作用时获取大气中的二氧化碳,同时尽量减少水分流失,这是通过调节气孔功能和发育来实现的。早期陆地植物中驱动气孔产生的祖先碱性螺旋-环-螺旋转录因子(TF)基因在序列和功能上发生了多样化,形成了旁系同源基因“无言”(SPCH)、“沉默”(MUTE)和“法玛”(FAMA)。现存的被子植物利用这三种转录因子及其异源二聚体伙伴来调节气孔细胞身份。禾本科植物在SPCH的重复和缺失方面表现出一组特别有趣的情况。我们利用系统发育方法追踪了SPCH在禾本科特有的全基因组重复事件中的重复情况,并证明这两个旁系同源基因仍在受到选择。通过追踪对 或 发生突变的植物对环境变化的反应,我们揭示了旁系同源基因在对光照或温度变化的反应上存在特异性差异,并进一步表明这种行为在旁系同源基因中是保守的。对禾本科植物中 的RNA和蛋白质表达以及序列变异的分析支持了旁系同源基因差异的合理分子机制以及驱动气孔表型的细胞机制。这些研究表明了关键气孔调节因子的重复如何实现适应性,并且可以为减轻重要农作物预期应激源的遗传策略提供参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/c893a96b8cad/nihpp-2025.07.29.667563v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/44bb1be26457/nihpp-2025.07.29.667563v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/42b9f4b7ffa1/nihpp-2025.07.29.667563v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/5a4ffc0a29db/nihpp-2025.07.29.667563v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/c893a96b8cad/nihpp-2025.07.29.667563v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/44bb1be26457/nihpp-2025.07.29.667563v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/42b9f4b7ffa1/nihpp-2025.07.29.667563v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/5a4ffc0a29db/nihpp-2025.07.29.667563v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5356/12327695/c893a96b8cad/nihpp-2025.07.29.667563v1-f0004.jpg

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Development. 2024 Oct 15;151(20). doi: 10.1242/dev.203011. Epub 2024 Sep 26.
2
Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages.禾本科全基因组加倍的系统基因组特征及主要禾本科谱系中差异重复保留和丢失的景观。
Nat Commun. 2024 Apr 17;15(1):3305. doi: 10.1038/s41467-024-47428-9.
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The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024.
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Nucleic Acids Res. 2024 Jul 5;52(W1):W521-W525. doi: 10.1093/nar/gkae241.
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JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.JASPAR 2024:转录因子结合谱开放获取数据库的 20 周年纪念
Nucleic Acids Res. 2024 Jan 5;52(D1):D174-D182. doi: 10.1093/nar/gkad1059.
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Tackling redundancy: genetic mechanisms underlying paralog compensation in plants.解决冗余问题:植物中基因家族成员补偿的遗传机制。
New Phytol. 2023 Nov;240(4):1381-1389. doi: 10.1111/nph.19267. Epub 2023 Sep 19.
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Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms.全基因组复制与被子植物基因调控网络的长期进化
Mol Biol Evol. 2023 Jul 5;40(7). doi: 10.1093/molbev/msad141.
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Opposite polarity programs regulate asymmetric subsidiary cell divisions in grasses.相反极性程序调节禾本科植物不对称的附属细胞分裂。
Elife. 2022 Dec 20;11:e79913. doi: 10.7554/eLife.79913.
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