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本文引用的文献

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Microbial response to acid stress: mechanisms and applications.微生物对酸应激的响应：机制与应用。
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2
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.混合宏基因组组装可实现人类微生物组中抗性决定因子和移动元件的高分辨率分析。
Nat Biotechnol. 2019 Aug;37(8):937-944. doi: 10.1038/s41587-019-0191-2. Epub 2019 Jul 29.
3
Resilience and recovery of Dehalococcoides mccartyi following low pH exposure.低pH值暴露后麦氏嗜盐脱卤球菌的恢复力与恢复情况
FEMS Microbiol Ecol. 2017 Dec 1;93(12). doi: 10.1093/femsec/fix130.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
5
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
6
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.MEGAHIT：通过简洁的 de Bruijn 图实现的超快速单节点解决方案，适用于大型和复杂的宏基因组组装。
Bioinformatics. 2015 May 15;31(10):1674-6. doi: 10.1093/bioinformatics/btv033. Epub 2015 Jan 20.
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Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
8
Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi.地杆菌属 mccartyi 属，新种，严格依赖有机卤化物进行呼吸的厌氧细菌，与卤代物循环和生物修复有关，属于新的细菌类群，脱卤球菌纲（Dehalococcoidia classis nov.），脱卤球菌目（Dehalococcoidales ord. nov.）和脱卤球菌科（Dehalococcoidaceae fam. nov.），在绿弯菌门（Chloroflexi）内。
Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):625-635. doi: 10.1099/ijs.0.034926-0. Epub 2012 Apr 27.
9
Enrichment, cultivation, and detection of reductively dechlorinating bacteria.还原性脱氯细菌的富集、培养与检测
Methods Enzymol. 2005;397:77-111. doi: 10.1016/S0076-6879(05)97005-5.

耐酸有机卤呼吸细菌NK菌株的全基因组序列

Complete genome sequence of strain NK, an acid-tolerant organohalide-respiring bacterium.

作者信息

Cui Yiru, Yang Yi, Li Xiuying, Wang Jingjing, Jin Huijuan, Liao Hengyi, Wang Xin, Shi Ke, Huang Siqi, Zhou Tongyue, Löffler Frank E, Yan Jun

机构信息

Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning, China.

University of Chinese Academy of Sciences, Beijing, China.

出版信息

Microbiol Resour Announc. 2025 Sep 11;14(9):e0063325. doi: 10.1128/mra.00633-25. Epub 2025 Aug 11.

DOI:10.1128/mra.00633-25
PMID:40788149
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12424303/
Abstract

strain NK reductively dechlorinates tetrachloroethene to ethene at pH 5.5. The metagenome-assembled strain NK genome is 1.51 Mb in size with a G + C content of 48.6%.

摘要

菌株NK在pH 5.5的条件下将四氯乙烯还原脱氯为乙烯。通过宏基因组组装得到的菌株NK基因组大小为1.51 Mb，G + C含量为48.6%。