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对一种热稳定的(S)-选择性胺转氨酶的功能和结构见解及其通过蛋白质工程改善的底物范围

Functional and structural insights into a thermostable (S)-selective amine transaminase and its improved substrate scope by protein engineering.

作者信息

Patti Stefania, De Rose Simone A, Isupov Michail N, Magrini Alunno Ilaria, Riva Sergio, Ferrandi Erica Elisa, Littlechild Jennifer A, Monti Daniela

机构信息

Istituto Di Scienze E Tecnologie Chimiche "G. Natta" (SCITEC), CNR, Milan, Italy.

Department of Pharmaceutical Sciences, University of Milan, Milan, Italy.

出版信息

Appl Microbiol Biotechnol. 2025 Aug 12;109(1):180. doi: 10.1007/s00253-025-13536-9.

DOI:10.1007/s00253-025-13536-9
PMID:40796981
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12343752/
Abstract

A (S)-selective amine transaminase from a Streptomyces strain, Sbv333-ATA, is a biocatalyst showing both high thermostability with a melting temperature of 85 °C and broad substrate specificity for the amino acceptor. This enzyme was further characterized both biochemically and structurally. The Sbv333-ATA is stable in the presence of up to 20% (v/v) of the water-miscible cosolvents methanol, ethanol, acetonitrile, and dimethyl sulfoxide, and in biphasic systems with petroleum ether, toluene, and ethyl acetate as an organic phase. The enzyme showed also a good activity toward different amino donors, such as (S)-methylbenzylamine and 2-phenylethylamine, aliphatic mono- and di-amines, like propylamine and cadaverine, and selected amino acids. However, more sterically hindered aromatic amines were not accepted. Based on the knowledge of the three-dimensional structures obtained, a rational approach to site specific mutagenesis was carried out to broaden the substrate specificity of Sbv333-ATA. The mutant W89A showed the highest activity toward bulky amines as substrates, such as the diaromatic compound 1,2-diphenylethylamine. The 3D structures of the holo and inhibitor gabaculine bound forms of native Sbv333-ATA, and holo W89A and F61C mutants were determined at high resolutions of 1.49, 1.24, and 1.31 (both mutants) Å, respectively. These structures were important for revealing further details of the active site binding pockets of the Sbv333-ATA and its mechanism. KEY POINTS: • Sbv333-ATA is a highly thermostable transaminase with a broad substrate scope. • Sbv333-ATA remains active in various organic cosolvents and biphasic systems. • Mutant W89A expands substrate range to accept bulky diaromatic amines.

摘要

从链霉菌菌株中分离得到的一种(S)-选择性胺转氨酶Sbv333-ATA,是一种生物催化剂,具有85℃的解链温度,表现出高热稳定性,并且对氨基受体具有广泛的底物特异性。对该酶进行了进一步的生化和结构表征。Sbv333-ATA在高达20%(v/v)的与水混溶的助溶剂甲醇、乙醇、乙腈和二甲基亚砜存在下稳定,并且在以石油醚、甲苯和乙酸乙酯为有机相的双相体系中也稳定。该酶对不同的氨基供体也表现出良好的活性,如(S)-甲基苄胺和2-苯乙胺、脂肪族单胺和二胺,如丙胺和尸胺,以及选定的氨基酸。然而,空间位阻较大的芳香胺不被接受。基于所获得的三维结构知识,开展了位点特异性诱变的合理方法,以拓宽Sbv333-ATA的底物特异性。突变体W89A对诸如二芳基化合物1,2-二苯乙胺等体积较大的胺作为底物表现出最高活性。天然Sbv333-ATA的全酶形式和抑制剂加巴喷丁结合形式、全酶W89A和F61C突变体的三维结构分别在1.49、1.24和1.31(两个突变体)Å的高分辨率下测定。这些结构对于揭示Sbv333-ATA活性位点结合口袋的更多细节及其机制很重要。要点:• Sbv333-ATA是一种具有广泛底物范围的高热稳定性转氨酶。• Sbv333-ATA在各种有机助溶剂和双相体系中仍保持活性。• 突变体W89A扩大了底物范围,以接受体积较大的二芳基胺。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/3d6a54a435dc/253_2025_13536_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/3a45aafdc1e6/253_2025_13536_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/708125841997/253_2025_13536_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/982c7658eb28/253_2025_13536_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/d8138baf2427/253_2025_13536_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/107c3eadd2b4/253_2025_13536_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/1e573cb04c52/253_2025_13536_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/878ba3bcfb84/253_2025_13536_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/3d6a54a435dc/253_2025_13536_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/3a45aafdc1e6/253_2025_13536_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/708125841997/253_2025_13536_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/982c7658eb28/253_2025_13536_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/d8138baf2427/253_2025_13536_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/107c3eadd2b4/253_2025_13536_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/1e573cb04c52/253_2025_13536_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/878ba3bcfb84/253_2025_13536_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b731/12343752/3d6a54a435dc/253_2025_13536_Fig8_HTML.jpg

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