Kasbe Mithila, Yahsi Berkay, Whitehead Kalyn, Oh Jiwon, Mosharraf Mashwiyat, Sohn Kayla, Phan Trinh, Lee Mark N
Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.
Human and Translational Immunology program, Yale School of Medicine, New Haven, CT, USA.
bioRxiv. 2025 Aug 4:2025.08.03.668342. doi: 10.1101/2025.08.03.668342.
T cell repertoires of different individuals occasionally converge on the same T cell receptor (TCR) sequence as a solution to target immunodominant epitopes. A complete mapping of these "public" TCR specificities may enable a global understanding of population-level immune histories. Here, we sought to determine the antigen specificities of public TCRs with unknown target identity. We developed a functional screening workflow in which we screen panels of TCRs for reactivity to individual viral genomes or to approximately 1,000 viral reference strains, and then sort out the immunogenic peptides by labeling antigen-presenting cells that are in proximity to activated T cells. Using this workflow, we identified the target specificities of T cells that are circulating in up to 14% of individuals, including a pre-COVID-19 seasonal coronavirus-reactive TCR that cross-reacts with peptides within pandemic coronaviruses; an influenza B-reactive TCR that targets a highly conserved epitope; and TCRs targeting Herpesviridae family viruses that cause long-term latent infections. Our results demonstrate an efficient strategy to reveal public T cell memories , offering a window into shared immune exposures.
不同个体的T细胞库偶尔会汇聚到相同的T细胞受体(TCR)序列上,作为靶向免疫显性表位的一种解决方案。对这些“公共”TCR特异性进行完整的图谱绘制,可能有助于从整体上了解群体水平的免疫历史。在此,我们试图确定靶点身份未知的公共TCR的抗原特异性。我们开发了一种功能筛选流程,在该流程中,我们筛选TCR库对单个病毒基因组或约1000种病毒参考毒株的反应性,然后通过标记与活化T细胞邻近的抗原呈递细胞来筛选出免疫原性肽段。利用这一流程,我们确定了在高达14%的个体中循环的T细胞的靶点特异性,包括一种与大流行冠状病毒内的肽段发生交叉反应的新冠疫情前季节性冠状病毒反应性TCR;一种靶向高度保守表位的乙型流感病毒反应性TCR;以及靶向导致长期潜伏感染的疱疹病毒科病毒的TCR。我们的结果证明了一种揭示公共T细胞记忆的有效策略,为了解共享免疫暴露提供了一个窗口。