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大麦和水稻耐盐性相关家族基因的全基因组鉴定、特征分析及比较

Genome-Wide Identification, Characterization, and Comparison of Family Genes in Salt Tolerance Between Barley and Rice.

作者信息

Chen Kerun, Wang Shuai, Xu Xiaohan, Zheng Xintong, Wu Hongkai, Huang Linzhou, Dai Liping, Zhan Chenfang, Zeng Dali, Fu Liangbo

机构信息

College of Advanced Agricultural Sciences, Zhejiang A&F University, Hangzhou 311300, China.

出版信息

Plants (Basel). 2025 Aug 3;14(15):2404. doi: 10.3390/plants14152404.

Abstract

Soil salinization constitutes a major constraint on global agricultural production, with marked divergence in salt adaptation strategies between salt-tolerant barley () and salt-sensitive rice (). This study systematically investigated the evolution and functional specialization of the C3HC4-type RING zinc finger gene family, known to mediate abiotic stress responses through E3 ubiquitin ligase activity, in these contrasting cereal species. Through comparative genomics, we identified 123 genes and 90 genes, phylogenetically classified into four conserved subgroups. Differences in genes in phylogenetic relationships, chromosomal distribution, gene structure, motif composition, gene duplication events, and -elements in the promoter region were observed between barley and rice. Moreover, in barley tissues preferentially adopted an energy-conserving strategy, which may be a key mechanism for barley's higher salt tolerance. Additionally, we found that genes were evolutionarily conserved in salt-tolerant species. The current results reveal striking differences in salt tolerance between barley and rice mediated by the gene family and offer valuable insight for potential genetic engineering applications in improving crop resilience to salinity stress.

摘要

土壤盐渍化是全球农业生产的主要限制因素,耐盐大麦()和盐敏感水稻()在盐适应策略上存在显著差异。本研究系统地调查了C3HC4型RING锌指基因家族在这些对比鲜明的谷类物种中的进化和功能特化,已知该基因家族通过E3泛素连接酶活性介导非生物胁迫反应。通过比较基因组学,我们鉴定出123个基因和90个基因,系统发育上分为四个保守亚组。在大麦和水稻之间观察到基因在系统发育关系、染色体分布、基因结构、基序组成、基因复制事件和启动子区域的元件方面存在差异。此外,大麦组织中的基因优先采用节能策略,这可能是大麦耐盐性较高的关键机制。此外,我们发现基因在耐盐物种中进化保守。目前的结果揭示了由基因家族介导的大麦和水稻在耐盐性上的显著差异,并为潜在的基因工程应用提供了有价值的见解,以提高作物对盐胁迫的耐受性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b48/12348927/f6d31b76b534/plants-14-02404-g001.jpg

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