不同地理区域人类肠道菌群的比较基因组学与适应性进化
Comparative Genomics and Adaptive Evolution of in Geographically Distinct Human Gut Populations.
作者信息
Fu Pei, Qi Hao, Liu Wenjun
机构信息
Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, Hohhot 010018, China.
Key Laboratory of Dairy Products Processing, Ministry of Agriculture and Rural Affairs, Inner Mongolia Agricultural University, Hohhot 010018, China.
出版信息
Foods. 2025 Aug 6;14(15):2747. doi: 10.3390/foods14152747.
is prevalent in the gastrointestinal tract of healthy humans, and significantly influences host health. Recent studies have predominantly investigated the probiotic characteristics of individual strains and their specific metabolic roles, whereas analyses at the population genome level have been limited to date. This study conducted a comparative genomics analysis of 543 genomes to explore genetic background variations and functional gene differences across geographically diverse populations. The results revealed significant differences in genome size and GC content among populations from Asia, Europe, and North America ( < 0.05). The pan-gene exhibited an open structure, reflecting the substantial genetic diversity within . Functional annotation demonstrated that possesses numerous protein-coding genes and abundant carbohydrate-active enzymes (CAZys) implicated in carbohydrate degradation and transformation. Population-specific CAZys were identified, suggesting adaptive evolution driven by distinct regional dietary patterns.
在健康人类的胃肠道中普遍存在,并对宿主健康有显著影响。最近的研究主要调查了单个菌株的益生菌特性及其特定的代谢作用,而迄今为止,在群体基因组水平上的分析还很有限。本研究对543个基因组进行了比较基因组学分析,以探索不同地理群体之间的遗传背景变异和功能基因差异。结果显示,亚洲、欧洲和北美群体之间的基因组大小和GC含量存在显著差异(<0.05)。泛基因组呈现开放结构,反映了其内部大量的遗传多样性。功能注释表明,其拥有众多参与碳水化合物降解和转化的蛋白质编码基因以及丰富的碳水化合物活性酶(CAZys)。鉴定出了群体特异性的CAZys,表明不同区域饮食模式驱动了适应性进化。
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