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使用DeepLabCut和简单行为分析对C57BL/6J小鼠头部抽搐反应进行快速、开源和自动量化

Rapid, Open-Source, and Automated Quantification of the Head Twitch Response in C57BL/6J Mice Using DeepLabCut and Simple Behavioral Analysis.

作者信息

Maitland Alexander D, Gonzalez Nicholas R, Walther Donna, Pereira Francisco, Baumann Michael H, Glatfelter Grant C

机构信息

Designer Drug Research Unit, National Institute on Drug Abuse, Intramural Research Program, Baltimore, Maryland 21224, United States.

Machine Learning Team, National Institute of Mental Health, Intramural Research Program, Bethesda, Maryland 20814, United States.

出版信息

ACS Pharmacol Transl Sci. 2025 Jul 31;8(8):2694-2709. doi: 10.1021/acsptsci.5c00305. eCollection 2025 Aug 8.

Abstract

Serotonergic psychedelics induce the head twitch response (HTR) in mice, an index of serotonin (5-HT) 2A receptor (5-HT) agonism and a behavioral proxy for psychedelic effects in humans. Existing methods for detecting HTRs include time-consuming visual scoring, magnetometer-based approaches, and analysis of videos using semi-automated commercial software. Here, we present a new automated approach for quantifying HTRs from experimental videos using the open-source machine learning-based toolkits, DeepLabCut (DLC) and Simple Behavioral Analysis (SimBA). Pose estimation DLC models were trained to predict , coordinates of 13 body parts of C57BL/6J mice using historical experimental videos of HTRs induced by various psychedelic drugs. Next, a nonoverlapping set of historical experimental videos was analyzed and used to train SimBA random forest behavioral classifiers to predict the presence of the HTR. The DLC + SimBA approach was then validated using a separate subset of visually scored videos. DLC + SimBA model performance was assessed at different video resolutions (50%, 25%, 12.5%) and frame rates (120, 60, 30 frames per second or fps). Our results indicate that HTRs can be quantified accurately at 50% resolution and 120 fps (precision = 95.45, recall = 95.56, = 95.51) or at lower frame rates and resolutions (i.e., 50% resolution and 60 fps). The best performing DLC + SimBA model combination was deployed to evaluate the effects of bufotenine, a tryptamine derivative with uncharacterized potency and efficacy in the modern HTR paradigm. Interestingly, bufotenine only induced elevated HTRs (ED = 0.99 mg/kg, max counts = 24) when serotonin 1A receptors (5-HT) were pharmacologically blocked and activity at other sites of action may also impact its pharmacological effects (e.g., serotonin transporter). HTR counts for a subset of 21 videos from bufotenine experiments were strongly correlated for DLC + SimBA vs visual scoring and semi-automated software detection methods ( = 0.98 and 0.99). Finally, the DLC + SimBA approach displayed high accuracy when compared to visual scoring of HTRs for three serotonergic psychedelic drugs with variable HTR frequencies ( = 0.99 vs mean visual scores from 3 blinded raters). In summary, the DLC + SimBA approach represents a modular, noninvasive, and open-source method of HTR detection from experimental videos with accuracy comparable to magnetometer-based approaches and greater speed than visual scoring.

摘要

血清素能致幻剂可在小鼠中诱发头部抽搐反应(HTR),这是血清素(5-HT)2A受体激动作用的一个指标,也是人类致幻效果的行为替代指标。现有的检测HTR的方法包括耗时的视觉评分、基于磁力计的方法以及使用半自动商业软件对视频进行分析。在此,我们提出一种新的自动化方法,使用基于开源机器学习的工具包DeepLabCut(DLC)和简单行为分析(SimBA)从实验视频中量化HTR。使用各种致幻药物诱发HTR的历史实验视频,训练姿态估计DLC模型来预测C57BL/6J小鼠13个身体部位的坐标。接下来,对一组不重叠的历史实验视频进行分析,并用于训练SimBA随机森林行为分类器以预测HTR的存在。然后使用视觉评分视频的单独子集对DLC + SimBA方法进行验证。在不同的视频分辨率(50%、25%、12.5%)和帧率(每秒120、60、30帧或fps)下评估DLC + SimBA模型的性能。我们的结果表明,在50%分辨率和120 fps(精确率 = 95.45,召回率 = 95.56,F1值 = 95.51)或更低的帧率和分辨率(即50%分辨率和60 fps)下,可以准确量化HTR。性能最佳的DLC + SimBA模型组合被用于评估蟾蜍色胺的作用,蟾蜍色胺是一种色胺衍生物,在现代HTR范式中的效力和功效尚未明确。有趣的是,只有在血清素1A受体(5-HT)被药理阻断时,蟾蜍色胺才会诱发HTR升高(半数有效剂量 = 0.99 mg/kg,最大计数 = 24),并且在其他作用位点的活性也可能影响其药理作用(例如血清素转运体)。来自蟾蜍色胺实验的21个视频子集的HTR计数,对于DLC + SimBA与视觉评分和半自动软件检测方法而言,相关性很强(分别为0.98和0.99)。最后,与对三种具有不同HTR频率的血清素能致幻药物的HTR视觉评分相比,DLC + SimBA方法显示出很高的准确性(F1值 = 0.99,而来自3名盲法评分者的平均视觉评分为0.99)。总之,DLC + SimBA方法代表了一种模块化、非侵入性的开源方法,用于从实验视频中检测HTR,其准确性与基于磁力计的方法相当,且速度比视觉评分更快。

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