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严重急性呼吸综合征冠状病毒2(SARS-CoV-2)外切核糖核酸酶和甲基转移酶复合物中的铁硫簇:与病毒基因组校对和加帽的相关性

Iron-sulfur clusters in SARS-CoV-2 exoribonuclease and methyltransferase complexes: relevance for viral genome proofreading and capping.

作者信息

Maio Nunziata, Terranova Umberto, Li Yan, Bollinger J Martin, Krebs Carsten, Rouault Tracey A

机构信息

Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, USA.

Faculty of Medicine and Health Sciences, The University of Buckingham, Buckingham MK18 1EG & Crewe Campus, Crewe Green Road, Crewe, CW1 5DU, UK.

出版信息

Nat Commun. 2025 Aug 15;16(1):7585. doi: 10.1038/s41467-025-62832-5.

DOI:10.1038/s41467-025-62832-5
PMID:40817372
Abstract

Coronaviruses rely on a multifunctional replication-transcription complex to ensure genome fidelity and support viral propagation. Within this complex, the nsp14-nsp10 heterodimer possesses 3'-5' exoribonuclease (ExoN) activity, while nsp14 alone functions as an N7-methyltransferase and the nsp16/nsp10 complex completes viral RNA capping via its 2'-O-methyltransferase. Here, we report that nsp14 and nsp10 ligate [FeS] clusters when purified anoxically, in sites previously modeled as zinc centers. Quantum mechanics/molecular mechanics simulations revealed distinct reduction potentials for these iron-sulfur (Fe-S) clusters, and redox titrations demonstrated that changes in oxidation state modulate RNA binding by nsp14 and the nsp10/nsp16 complex. Functionally, Fe-S clusters enhance the methyltransferase activities of nsp14 and nsp10/nsp16, while leaving the ExoN activity unaffected. These findings uncover a redox-regulated role for Fe-S clusters in SARS-CoV-2 RNA processing and suggest that the viral core enzymatic functions may be modulated by the redox state of their Fe-S cofactors.

摘要

冠状病毒依靠多功能复制转录复合体来确保基因组保真度并支持病毒繁殖。在这个复合体内,nsp14-nsp10异二聚体具有3'-5'外切核糖核酸酶(ExoN)活性,而单独的nsp14作为N7-甲基转移酶发挥作用,并且nsp16/nsp10复合体通过其2'-O-甲基转移酶完成病毒RNA加帽。在此,我们报告称,当在无氧条件下纯化时,nsp14和nsp10会在先前被模拟为锌中心的位点连接[FeS]簇。量子力学/分子力学模拟揭示了这些铁硫(Fe-S)簇具有不同的还原电位,并且氧化还原滴定表明氧化态的变化会调节nsp14以及nsp10/nsp16复合体与RNA的结合。在功能上,Fe-S簇增强了nsp14和nsp10/nsp16的甲基转移酶活性,而对外切核糖核酸酶活性没有影响。这些发现揭示了Fe-S簇在SARS-CoV-2 RNA加工中具有氧化还原调节作用,并表明病毒核心酶功能可能受其Fe-S辅因子的氧化还原状态调节。

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本文引用的文献

1
Iron-Sulfur Peptides Mimicking Ferredoxin for an Efficient Electron Transfer to Hydrogenase.铁硫肽模拟铁氧还蛋白以实现高效向氢化酶的电子转移。
Chembiochem. 2024 Oct 16;25(20):e202400380. doi: 10.1002/cbic.202400380. Epub 2024 Oct 4.
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CIAO1 loss of function causes a neuromuscular disorder with compromise of nucleocytoplasmic Fe-S enzymes.CIAO1 功能丧失导致神经肌肉疾病,核质 Fe-S 酶受到影响。
J Clin Invest. 2024 Jun 17;134(12):e179559. doi: 10.1172/JCI179559.
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Iron‑sulfur clusters in viral proteins: Exploring their elusive nature, roles and new avenues for targeting infections.
病毒蛋白中的铁硫簇:探索其难以捉摸的性质、作用以及靶向感染的新途径。
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An iron-sulfur cluster in the zinc-binding domain of the SARS-CoV-2 helicase modulates its RNA-binding and -unwinding activities.SARS-CoV-2 解旋酶锌结合域中的一个铁硫簇调节其 RNA 结合和 - 解旋活性。
Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2303860120. doi: 10.1073/pnas.2303860120. Epub 2023 Aug 8.
5
Crystal structures and fragment screening of SARS-CoV-2 NSP14 reveal details of exoribonuclease activation and mRNA capping and provide starting points for antiviral drug development.SARS-CoV-2 NSP14 的晶体结构和片段筛选揭示了外切核酸酶激活和 mRNA 加帽的详细信息,并为抗病毒药物的开发提供了起点。
Nucleic Acids Res. 2023 Jan 11;51(1):475-487. doi: 10.1093/nar/gkac1207.
6
An early origin of iron-sulfur cluster biosynthesis machineries before Earth oxygenation.在地球氧气化之前,铁硫簇生物合成机器的早期起源。
Nat Ecol Evol. 2022 Oct;6(10):1564-1572. doi: 10.1038/s41559-022-01857-1. Epub 2022 Sep 15.
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The mechanism of RNA capping by SARS-CoV-2.SARS-CoV-2 的 RNA 加帽机制。
Nature. 2022 Sep;609(7928):793-800. doi: 10.1038/s41586-022-05185-z. Epub 2022 Aug 9.
9
A site-differentiated [4Fe-4S] cluster controls electron transfer reactivity of [FeFe]-hydrogenase I.一个位点差异化的[4Fe-4S]簇控制着[FeFe]氢化酶I的电子转移反应活性。
Chem Sci. 2022 Mar 25;13(16):4581-4588. doi: 10.1039/d1sc07120c. eCollection 2022 Apr 20.
10
Refolding of lid subdomain of SARS-CoV-2 nsp14 upon nsp10 interaction releases exonuclease activity.SARS-CoV-2 nsp14 盖子亚结构域在与 nsp10 相互作用时的重折叠释放出外切核酸酶活性。
Structure. 2022 Aug 4;30(8):1050-1054.e2. doi: 10.1016/j.str.2022.04.014. Epub 2022 May 23.