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一张白纸,实验性食物外壳的食物输入与回收蛋白质信号之间的差异。

An unclean slate, discrepancies between food input and recovered protein signal from experimental foodcrusts.

作者信息

Dekker Joannes Adrianus Antonius, Hagan Richard, Collins Matthew, Hendy Jessica

机构信息

Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy.

Section for Geobiology, Globe Institute, University of Copenhagen, Copenhagen, Denmark.

出版信息

PLoS One. 2025 Aug 22;20(8):e0330195. doi: 10.1371/journal.pone.0330195. eCollection 2025.

Abstract

Organic residues are a rich source of biomolecular information on ancient diets. In particular, foodcrusts, charred residues on ceramics, are commonly analysed for their lipid content and to a lesser extent protein in order to identify foods, culinary practices and material culture use in past populations. However, the composition of foodcrusts and the factors behind their formation are not well understood. Here we analyse proteomic data (available via ProteomeXchange with identifier PXD059930) from foodcrusts made using a series of mixtures of protein- (salmon flesh), lipid- (beef fat) and carbohydrate-rich (beetroot) foods to investigate the relationship between the biomolecular composition of the input and the recovered signal using conventional methods applied to archaeological material. Additionally, using 3D modelling we quantify the volume of foodcrust generated by different ingredient combinations The results highlight biases in the data obtained in the analyses of organic residues both in terms of identified resources reflecting the cooked foodstuffs, e.g., an overrepresentation of fish proteins, as well as with regards to the abundance of foodcrust, for example mixtures of only salmon and beef fat resulted in relatively small amounts of foodcrust, and suggest caution in interpreting the composition of residues formed from complex mixtures of foodstuffs.

摘要

有机残留物是古代饮食中生物分子信息的丰富来源。特别是食物残渣,即陶瓷上的烧焦残留物,通常会被分析其脂质含量,蛋白质分析的程度相对较低,以便确定过去人群的食物、烹饪方法和物质文化用途。然而,食物残渣的组成及其形成背后的因素尚未得到很好的理解。在这里,我们分析了来自使用一系列富含蛋白质(鲑鱼肉)、脂质(牛肉脂肪)和碳水化合物(甜菜根)的食物混合物制成的食物残渣的蛋白质组学数据(可通过ProteomeXchange获取,标识符为PXD059930),以使用应用于考古材料的传统方法研究输入物的生物分子组成与回收信号之间的关系。此外,我们使用三维建模来量化不同成分组合产生的食物残渣的体积。结果突出了在有机残留物分析中获得的数据存在的偏差,这在反映烹饪食物的已识别资源方面,例如鱼类蛋白质的过度呈现,以及在食物残渣的丰度方面,例如仅鲑鱼和牛肉脂肪的混合物产生的食物残渣量相对较少,这表明在解释由复杂食物混合物形成的残留物的组成时要谨慎。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b934/12373221/2bb11c28da0a/pone.0330195.g001.jpg

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