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使用单一化学切割程序分析DNA序列。

Analysis of DNA sequences using a single chemical cleavage procedure.

作者信息

Ambrose B J, Pless R C

出版信息

Biochemistry. 1985 Oct 22;24(22):6194-200. doi: 10.1021/bi00343a025.

DOI:10.1021/bi00343a025
PMID:4084513
Abstract

A novel approach to sequence analysis of end-labeled, defined DNA fragments, using a single chemical cleavage procedure and electrophoretic separation in a single lane, has been developed. Prolonged treatment with hot aqueous piperidine results in partial cleavage of the DNA at all positions; the relative propensity for this cleavage is different for the various bases in the DNA. The hydrolysate is resolved on a DNA sequencing gel, and the distribution of radioactivity in the electrophoretic lane is analyzed (a) in terms of differential peak heights of the radioactive bands and (b) in terms of the spacings between successive bands. Simultaneous application of these two base-characteristic criteria allows the deduction of the nucleotide sequence with an accuracy approaching that of the established four-lane methods of DNA sequencing.

摘要

一种用于末端标记的特定DNA片段序列分析的新方法已经开发出来,该方法使用单一化学切割程序,并在单泳道中进行电泳分离。用热的哌啶水溶液长时间处理会导致DNA在所有位置部分切割;这种切割的相对倾向因DNA中的各种碱基而异。水解产物在DNA测序凝胶上进行分离,并分析电泳泳道中放射性的分布:(a) 根据放射性条带的差异峰高,以及(b) 根据连续条带之间的间距。同时应用这两个碱基特征标准,可以推导出核苷酸序列,其准确性接近已确立的四泳道DNA测序方法。

相似文献

1
Analysis of DNA sequences using a single chemical cleavage procedure.使用单一化学切割程序分析DNA序列。
Biochemistry. 1985 Oct 22;24(22):6194-200. doi: 10.1021/bi00343a025.
2
One-lane sequence analysis of oligodeoxyribonucleotides.
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3
Sequence analysis of end-labeled DNA fragments by solvolysis in aqueous solutions of different amines.
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Sequence analysis of end-labeled DNA fragments by solvolysis in hot aqueous piperidine solutions.
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6
[A method for determining DNA sequence by labeling the end of the molecule and cleaving at the base. Isolation of DNA fragments, end-labeling, cleavage, electrophoresis in polyacrylamide gel and analysis of results].[一种通过标记分子末端并在碱基处切割来确定DNA序列的方法。DNA片段的分离、末端标记、切割、聚丙烯酰胺凝胶电泳及结果分析]
Mol Biol (Mosk). 1986 May-Jun;20(3):581-638.
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Direct chemical method for sequencing RNA.RNA测序的直接化学方法。
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引用本文的文献

1
Sequencing two DNA templates in five channels by digital compression.通过数字压缩在五个通道中对两个DNA模板进行测序。
Proc Natl Acad Sci U S A. 1993 Mar 1;90(5):1647-51. doi: 10.1073/pnas.90.5.1647.
2
Elimination of band compression in sequencing gels by the use of N4-methyl-2'-deoxycytidine 5'-triphosphate.通过使用N4-甲基-2'-脱氧胞苷5'-三磷酸消除测序凝胶中的条带压缩。
Nucleic Acids Res. 1993 Jun 11;21(11):2709-14. doi: 10.1093/nar/21.11.2709.
3
Adenine specific DNA chemical sequencing reaction.腺嘌呤特异性DNA化学测序反应。
Nucleic Acids Res. 1987 Oct 12;15(19):7823-30. doi: 10.1093/nar/15.19.7823.