Chen Kuiting, Fan Sisi, Liu Na, Song Jie, Pan Linqiang
Key Laboratory of Image Information Processing and Intelligent Control of Education Ministry of China, School of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China.
2nd Physics Institute, University of Stuttgart, Stuttgart 70569, Germany.
Nucleic Acids Res. 2025 Aug 27;53(16). doi: 10.1093/nar/gkaf835.
DNA nanotechnology has shown great potential for molecular information encoding and controlled access. With the remarkable progress of DNA data storage systems, it is imperative to develop DNA-based hierarchical access techniques to manage user data. However, to our knowledge, this aspect has yet to be fully explored. Herein, we propose a data management system on the carrier of reconfigurable DNA nanostructure, which enables hierarchical access to encoded data. The system employs two types of molecular triggers-polymerase and DNA strand sets-to induce conformational changes of the nanostructure. These structural transitions allow the transformation of pre-patterned binding sites into readable data arrays. The polymerase universally triggers transformations in different carriers, functioning as a high-level administrator key, while the DNA strand set specifically transforms a particular structure, serving as a low-level user key. In a multi-user scenario, we encoded multi-format messages to illustrate data compatibility. Atomic force microscopy results demonstrated that the admin key granted access to all users' data, while user keys provided access only to their designated data. This strategy provides a framework for hierarchical data access on DNA carriers and may inspire the development of more sophisticated DNA-based information security solutions by restricting unauthorized access and isolating user privacy.
DNA纳米技术在分子信息编码和可控访问方面显示出巨大潜力。随着DNA数据存储系统的显著进展,开发基于DNA的分层访问技术来管理用户数据势在必行。然而,据我们所知,这方面尚未得到充分探索。在此,我们提出一种基于可重构DNA纳米结构载体的数据管理系统,该系统能够对编码数据进行分层访问。该系统采用两种分子触发器——聚合酶和DNA链组——来诱导纳米结构的构象变化。这些结构转变允许将预图案化的结合位点转化为可读数据阵列。聚合酶在不同载体中普遍触发转变,充当高级管理员密钥,而DNA链组专门转化特定结构,充当低级用户密钥。在多用户场景中,我们编码了多种格式的消息以说明数据兼容性。原子力显微镜结果表明,管理员密钥可访问所有用户的数据,而用户密钥仅能访问其指定的数据。该策略为DNA载体上的分层数据访问提供了一个框架,并且通过限制未经授权的访问和隔离用户隐私,可能会激发更复杂的基于DNA的信息安全解决方案的开发。