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利用机器学习算法开发基于血清蛋白质组学的肺癌诊断模型并揭示SLC16A4在肿瘤进展和免疫反应中的作用

Development of a Serum Proteomic-Based Diagnostic Model for Lung Cancer Using Machine Learning Algorithms and Unveiling the Role of SLC16A4 in Tumor Progression and Immune Response.

作者信息

Hu Hanqin, Zhang Jiaxin, Zhang Lisha, Li Tiancan, Li Miaomiao, Li Jianxiang, Wang Jin

机构信息

School of Public Health, Suzhou Medical College of Soochow University, Suzhou 215123, China.

出版信息

Biomolecules. 2025 Jul 26;15(8):1081. doi: 10.3390/biom15081081.

DOI:10.3390/biom15081081
PMID:40867526
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12383841/
Abstract

Early diagnosis of lung cancer is crucial for improving patient prognosis. In this study, we developed a diagnostic model for lung cancer based on serum proteomic data from the GSE168198 dataset using four machine learning algorithms (nnet, glmnet, svm, and XGBoost). The model's performance was validated on datasets that included normal controls, disease controls, and lung cancer data containing both. Furthermore, the model's diagnostic capability was further validated on an independent external dataset. Our analysis identified SLC16A4 as a key protein in the model, which was significantly downregulated in lung cancer serum samples compared to normal controls. The expression of SLC16A4 was closely associated with clinical pathological features such as gender, tumor stage, lymph node metastasis, and smoking history. Functional assays revealed that overexpression of SLC16A4 significantly inhibited lung cancer cell proliferation and induced cellular senescence, suggesting its potential role in lung cancer development. Additionally, correlation analyses showed that expression was linked to immune cell infiltration and the expression of immune checkpoint genes, indicating its potential involvement in immune escape mechanisms. Based on multi-omics data from the TCGA database, we further discovered that the low expression of in lung cancer may be regulated by DNA copy number variations and DNA methylation. In conclusion, this study not only established an efficient diagnostic model for lung cancer but also identified SLC16A4 as a promising biomarker with potential applications in early diagnosis and immunotherapy.

摘要

肺癌的早期诊断对于改善患者预后至关重要。在本研究中,我们基于来自GSE168198数据集的血清蛋白质组数据,使用四种机器学习算法(nnet、glmnet、svm和XGBoost)开发了一种肺癌诊断模型。该模型的性能在包含正常对照、疾病对照以及同时包含两者的肺癌数据的数据集上得到了验证。此外,该模型的诊断能力在一个独立的外部数据集上进一步得到了验证。我们的分析确定SLC16A4是该模型中的关键蛋白,与正常对照相比,其在肺癌血清样本中显著下调。SLC16A4的表达与性别、肿瘤分期、淋巴结转移和吸烟史等临床病理特征密切相关。功能分析表明,SLC16A4的过表达显著抑制肺癌细胞增殖并诱导细胞衰老,提示其在肺癌发生发展中的潜在作用。此外,相关性分析表明,其表达与免疫细胞浸润和免疫检查点基因的表达相关,表明其可能参与免疫逃逸机制。基于来自TCGA数据库的多组学数据,我们进一步发现肺癌中其低表达可能受DNA拷贝数变异和DNA甲基化调控。总之,本研究不仅建立了一种高效的肺癌诊断模型,还确定SLC16A4是一种有前景的生物标志物,在早期诊断和免疫治疗中具有潜在应用价值。

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本文引用的文献

1
The epidemiological landscape of lung cancer: current status, temporal trend and future projections based on the latest estimates from GLOBOCAN 2022.肺癌的流行病学概况:基于GLOBOCAN 2022最新估计的现状、时间趋势及未来预测
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PCAS: An Integrated Tool for Multi-Dimensional Cancer Research Utilizing Clinical Proteomic Tumor Analysis Consortium Data.PCAS:利用临床蛋白质组肿瘤分析联盟数据进行多维癌症研究的综合工具。
Int J Mol Sci. 2024 Jun 18;25(12):6690. doi: 10.3390/ijms25126690.
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Pan-cancer characterization of cell-free immune-related miRNA identified as a robust biomarker for cancer diagnosis.
多癌种细胞游离免疫相关 miRNA 特征分析,鉴定为癌症诊断的稳健生物标志物。
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Proteomics: A new dimension to decode small cell lung cancer.蛋白质组学:解析小细胞肺癌的新维度。
Cell. 2024 Jan 4;187(1):14-16. doi: 10.1016/j.cell.2023.11.042.
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Multi-omic diagnostics of prostate cancer in the presence of benign prostatic hyperplasia.良性前列腺增生情况下前列腺癌的多组学诊断
Heliyon. 2023 Nov 19;9(12):e22604. doi: 10.1016/j.heliyon.2023.e22604. eCollection 2023 Dec.
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The global burden of lung cancer: current status and future trends.全球肺癌负担:现状与未来趋势。
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Construction of the XGBoost model for early lung cancer prediction based on metabolic indices.基于代谢指标的早期肺癌预测 XGBoost 模型的构建。
BMC Med Inform Decis Mak. 2023 Jun 13;23(1):107. doi: 10.1186/s12911-023-02171-x.
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Artificial Intelligence and Machine Learning in Clinical Medicine, 2023.临床医学中的人工智能与机器学习,2023年。
N Engl J Med. 2023 Mar 30;388(13):1201-1208. doi: 10.1056/NEJMra2302038.
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Targeting monocarboxylate transporters (MCTs) in cancer: How close are we to the clinics?靶向单羧酸转运蛋白(MCTs)治疗癌症:我们离临床应用还有多远?
Semin Cancer Biol. 2023 May;90:1-14. doi: 10.1016/j.semcancer.2023.01.007. Epub 2023 Jan 24.
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Machine Learning for Lung Cancer Diagnosis, Treatment, and Prognosis.机器学习在肺癌诊断、治疗和预后中的应用。
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