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玉米种子萌发过程中琥珀酸脱氢酶膜亚基编码基因启动子区域胞嘧啶甲基化的位点特异性变化

Site-Specific Changes in Cytosine Methylation in Promoters of the Genes Encoding the Membrane Subunits of Succinate Dehydrogenase During Germination of Maize Seeds.

作者信息

Fedorin Dmitry N, Eprintsev Alexander T, Igamberdiev Abir U

机构信息

Department of Biochemistry and Cell Physiology, Voronezh State University, 394018 Voronezh, Russia.

Department of Biology, Memorial University of Newfoundland, St. John's, NL A1C 5S7, Canada.

出版信息

Int J Mol Sci. 2025 Aug 19;26(16):8010. doi: 10.3390/ijms26168010.

Abstract

The cytosine methylation status of symmetric and asymmetric sites of promoters of the genes encoding the membrane-bound subunits C and D of succinate dehydrogenase (SDH) was assessed during the germination of maize ( L.) seeds, when the stored lipids were utilized and the glyoxylate cycle produced succinate. The results of bisulfite sequencing of the promoters of genes in maize scutella allowed us to determine the cytosine methylation status in the CG, CNG, and CNN sites. The observed site-specific changes in the cytosine methylation status of the and genes encoding the SDH subunit C indicate an important role in controlling their transcriptional activity. In contrast, no marked changes were observed in the methylation of promoters of the gene, encoding SDH subunit D. The analysis of changes in the activity of the CG, CNG, and CNN DNA methyltransferases revealed the redistribution of activity between CG, CNG, and CNN DNA methyltransferases toward an increase in the proportion of CG DNA methyltransferases. The locus-specific methylation dynamics of SDH membrane subunit promoters during maize germination have been demonstrated. It is concluded that the changes in the cytosine methylation status may play a role in the regulation of the expression of the genes in the course of the conversion of succinate formed in the glyoxylate cycle.

摘要

在玉米(L.)种子萌发过程中,当储存的脂质被利用且乙醛酸循环产生琥珀酸时,评估了琥珀酸脱氢酶(SDH)膜结合亚基C和D编码基因启动子的对称和不对称位点的胞嘧啶甲基化状态。对玉米胚乳中基因启动子的亚硫酸氢盐测序结果使我们能够确定CG、CNG和CNN位点的胞嘧啶甲基化状态。观察到的编码SDH亚基C的基因胞嘧啶甲基化状态的位点特异性变化表明其在控制转录活性方面具有重要作用。相比之下,编码SDH亚基D的基因启动子甲基化未观察到明显变化。对CG、CNG和CNN DNA甲基转移酶活性变化的分析揭示了CG、CNG和CNN DNA甲基转移酶之间活性的重新分布,朝着CG DNA甲基转移酶比例增加的方向发展。已经证明了玉米萌发过程中SDH膜亚基启动子的位点特异性甲基化动态。得出的结论是,胞嘧啶甲基化状态的变化可能在乙醛酸循环中形成的琥珀酸转化过程中对基因表达的调控起作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e3c9/12386843/7200bc282548/ijms-26-08010-g001.jpg

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