Li Ruiqi, Bi Chongpeng
College of Veterinary Medicine, Northeast Agricultural University, Harbin 150030, China.
College of Animal Science and Technology, Northeast Agricultural University, Harbin 150030, China.
Genes (Basel). 2025 Jul 24;16(8):869. doi: 10.3390/genes16080869.
: is widely utilized in the fermentation industry and offers potential health benefits. However, large-scale comparative genomic analyses aimed at exploring its metabolic functions and conducting safety assessments are still lacking. : In this study, we performed a comparative genomic analysis of 324 strains sourced from various origins and geographical locations. : The results revealed that possesses a total of 2403 core genes, of which 12.3% have an unknown function. The phylogenetic analysis revealed a mixed distribution from various origins, suggesting complex transmission pathways. The metabolic analysis demonstrated that strains can produce several beneficial metabolites, including lysine, acetate, and riboflavin. Furthermore, is highly capable of degrading various carbohydrates and proteins, increasing its adaptability. Further, we profiled the antimicrobial peptides (AMPs) in the genomes of . We identified a widely distributed AMP and its variants, presenting in a total of 280 genomes. In our biosafety assessment of , we identified several antibiotic resistance genes, such as , , and , which may have potential for horizontal gene transfer within the family. : This study provides genomic insights into the genetic diversity, metabolic functions, antimicrobial properties, and biosafety of , underscoring its potential applications in biotechnology and environmental adaptation.
:在发酵工业中被广泛应用,并具有潜在的健康益处。然而,旨在探索其代谢功能和进行安全性评估的大规模比较基因组分析仍然缺乏。:在本研究中,我们对来自不同来源和地理位置的324株菌株进行了比较基因组分析。:结果显示,共有2403个核心基因,其中12.3%的功能未知。系统发育分析揭示了来自不同来源的混合分布,表明传播途径复杂。代谢分析表明,菌株可以产生几种有益的代谢产物,包括赖氨酸、乙酸盐和核黄素。此外,高度能够降解各种碳水化合物和蛋白质,提高其适应性。此外,我们分析了基因组中的抗菌肽(AMPs)。我们鉴定出一种广泛分布的AMP及其变体,共存在于280个基因组中。在我们对的生物安全性评估中,我们鉴定出了几种抗生素抗性基因,如、和,它们可能在家族内具有水平基因转移的潜力。:本研究提供了关于的遗传多样性、代谢功能、抗菌特性和生物安全性的基因组见解,强调了其在生物技术和环境适应性方面的潜在应用。