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TIGR-Tas与RNA引导的基因组编辑系统的扩展宇宙:超越CRISPR-Cas的新时代。

TIGR-Tas and the Expanding Universe of RNA-Guided Genome Editing Systems: A New Era Beyond CRISPR-Cas.

作者信息

Ruden Douglas M

机构信息

Department of Obstetrics and Gynecology, C. S. Mott Center for Human Growth and Development, Institute of Environmental Health Sciences, Wayne State University, Detroit, MI 48201, USA.

出版信息

Genes (Basel). 2025 Jul 28;16(8):896. doi: 10.3390/genes16080896.

DOI:10.3390/genes16080896
PMID:40869944
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12385481/
Abstract

The recent discovery of TIGR-Tas (Tandem Interspaced Guide RNA-Targeting Systems) marks a major advance in the field of genome editing, introducing a new class of compact, programmable DNA-targeting systems that function independently of traditional CRISPR-Cas pathways. TIGR-Tas effectors use a novel dual-spacer guide RNA (tigRNA) to recognize both strands of target DNA without requiring a protospacer adjacent motif (PAM). These Tas proteins introduce double-stranded DNA cuts with characteristic 8-nucleotide 3' overhangs and are significantly smaller than Cas9, offering delivery advantages for in vivo editing. Structural analyses reveal homology to box C/D snoRNP proteins, suggesting a previously unrecognized evolutionary lineage of RNA-guided nucleases. This review positions TIGR-Tas at the forefront of a new wave of RNA-programmable genome-editing technologies. In parallel, I provide comparative insight into the diverse and increasingly modular CRISPR-Cas systems, including Cas9, Cas12, Cas13, and emerging effectors like Cas3, Cas10, CasΦ, and Cas14. While the CRISPR-Cas universe has revolutionized molecular biology, TIGR-Tas systems open a complementary and potentially more versatile path for programmable genome manipulation. I discuss mechanistic distinctions, evolutionary implications, and potential applications in human cells, synthetic biology, and therapeutic genome engineering.

摘要

TIGR-Tas(串联间隔引导RNA靶向系统)的最新发现标志着基因组编辑领域的一项重大进展,引入了一类新型的紧凑、可编程的DNA靶向系统,其功能独立于传统的CRISPR-Cas途径。TIGR-Tas效应器使用一种新型的双间隔引导RNA(tigRNA)来识别目标DNA的两条链,而无需原间隔相邻基序(PAM)。这些Tas蛋白会引入具有特征性8个核苷酸3'突出端的双链DNA切割,并且比Cas9小得多,为体内编辑提供了递送优势。结构分析揭示了与盒C/D snoRNP蛋白的同源性,表明存在一种以前未被认识的RNA引导核酸酶的进化谱系。这篇综述将TIGR-Tas置于新一轮RNA可编程基因组编辑技术的前沿。同时,我对包括Cas9、Cas12、Cas13以及如Cas3、Cas10、CasΦ和Cas14等新兴效应器在内的多样且日益模块化的CRISPR-Cas系统提供了比较性见解。虽然CRISPR-Cas领域已经彻底改变了分子生物学,但TIGR-Tas系统为可编程基因组操作开辟了一条互补且可能更具通用性的途径。我讨论了其机制差异、进化意义以及在人类细胞、合成生物学和治疗性基因组工程中的潜在应用。

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本文引用的文献

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Engineered Cas12j-8 is a Versatile Platform for Multiplexed Genome Modulation in Mammalian Cells.工程化的Cas12j-8是用于哺乳动物细胞中多重基因组调控的通用平台。
Adv Sci (Weinh). 2025 Sep;12(33):e02593. doi: 10.1002/advs.202502593. Epub 2025 Jun 10.
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SHERLOCK, a novel CRISPR-Cas13a-based assay for detection of infectious bursal disease virus.SHERLOCK,一种基于CRISPR-Cas13a的新型检测传染性法氏囊病病毒的检测方法。
J Virol Methods. 2025 Sep;337:115185. doi: 10.1016/j.jviromet.2025.115185. Epub 2025 May 12.
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Universal Amplification-Free RNA Detection by Integrating CRISPR-Cas10 with Aptameric Graphene Field-Effect Transistor.通过将CRISPR-Cas10与适体修饰的石墨烯场效应晶体管相结合实现无扩增通用RNA检测
Nanomicro Lett. 2025 Apr 30;17(1):242. doi: 10.1007/s40820-025-01730-3.
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Accelerating Cleavage Activity of CRISPR-Cas13 System on a Microfluidic Chip for Rapid Detection of RNA.在微流控芯片上加速CRISPR-Cas13系统的切割活性以实现RNA的快速检测
Anal Chem. 2025 May 13;97(18):9858-9865. doi: 10.1021/acs.analchem.5c00256. Epub 2025 Apr 30.
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CRISPR/Cas9-Based therapeutics as a promising strategy for management of Alzheimer's disease: progress and prospects.基于CRISPR/Cas9的疗法作为治疗阿尔茨海默病的一种有前景的策略:进展与展望
Front Cell Neurosci. 2025 Apr 7;19:1578138. doi: 10.3389/fncel.2025.1578138. eCollection 2025.
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Real-time imaging of bacterial colony growth dynamics for cells with Type IV-A1 CRISPR-Cas activity.具有IV-A1型CRISPR-Cas活性的细胞的细菌菌落生长动力学实时成像。
Microlife. 2025 Apr 1;6:uqaf006. doi: 10.1093/femsml/uqaf006. eCollection 2025.
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CASCADE-Cas3 enables highly efficient genome engineering in Streptomyces species.CASCADE-Cas3可实现链霉菌属物种中的高效基因组工程。
Nucleic Acids Res. 2025 Mar 20;53(6). doi: 10.1093/nar/gkaf214.
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