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小鼠出生后心脏发育的空间分辨转录组学数据集。

A dataset of spatially resolved transcriptomics of post-natal cardiac development in mice.

作者信息

Zheng Yuqing, Sun Tianyi, Pu Zhaoli, Li Li, Wu Xingyue, Yang Yan, Lei Ming, Tan Xiaoqiu, Li Tao, Ou Xianhong, Chen Tangting

机构信息

Key Laboratory of Medical Electrophysiology of the Ministry of Education, Medical Electrophysiological Key Laboratory of Sichuan Province, Institute of Cardiovascular Research, Southwest Medical University, Luzhou, Sichuan, 646000, China.

Department of Cardiology, the Affiliated Hospital, Southwest Medical University, Luzhou, Sichuan, 646000, China.

出版信息

Sci Data. 2025 Sep 2;12(1):1531. doi: 10.1038/s41597-025-05838-4.

Abstract

The post-natal development and maturation of the mammalian heart involve highly intricate processes that remain incompletely understood, particularly concerning the molecular signature and roles of the diverse cell types involved. In this study, we present a comprehensive dataset generated from murine hearts at three key post-natal developmental stages using Spatio-Temporal Enhanced Resolution Omics-Sequencing (Stereo-seq), an advanced spatially resolved transcriptomic technology. This dataset encompasses spatial transcriptomes of approximately 0.186 million individual cells within intact sections of murine hearts at post-natal developmental stages. Our dataset serves as a valuable resource for investigating the mechanisms underlying mammalian heart development and maturation. Through initial analyses, we identified distinct cell types and their spatial distributions, including 93,826 cardiomyocytes within a single heart section. This extensive dataset provides researchers with opportunities for data mining and facilitates diverse analyses, including studies on transcriptional regulation, cell-to-cell communication, and the functional activities of genes and signalling molecules during critical phases of heart development.

摘要

哺乳动物心脏的产后发育和成熟涉及高度复杂的过程,目前仍未完全了解,尤其是涉及的多种细胞类型的分子特征和作用。在本研究中,我们使用时空增强分辨率组学测序(Stereo-seq)这一先进的空间分辨转录组技术,展示了从小鼠心脏在三个关键产后发育阶段生成的综合数据集。该数据集涵盖了产后发育阶段小鼠心脏完整切片内约18.6万个单个细胞的空间转录组。我们的数据集是研究哺乳动物心脏发育和成熟潜在机制的宝贵资源。通过初步分析,我们确定了不同的细胞类型及其空间分布,包括单个心脏切片内的93,826个心肌细胞。这个广泛的数据集为研究人员提供了数据挖掘的机会,并促进了各种分析,包括对心脏发育关键阶段的转录调控、细胞间通讯以及基因和信号分子功能活动的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6242/12402441/45670be0dfec/41597_2025_5838_Fig1_HTML.jpg

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