具有光药理学应用前景的偶氮喹诺酮光诱导抗生素活性的计算研究

Computational Study on the Photo-Induced Antibiotic Activity of an Azoquinolone with Promising Applications in Photopharmacology.

作者信息

Castro Pedro J, Mendinueta Orlando D, Mays Mary H, Castro-Gómez Fernando

机构信息

Max Planck Research Group, Faculty of Chemistry and Pharmacy, Universidad del Atlántico, Barranquilla, 081007, Colombia.

BiBEC, The Hispanic Alliance for Clinical and Translational Research, Medical Science Campus, University of Puerto Rico, PR, 00936-5067, United States.

出版信息

ChemPhotoChem. 2025 Mar;9(3). doi: 10.1002/cptc.202400280. Epub 2024 Nov 24.

Abstract

Azocompounds are among the most important group of molecular photoswitches due to their multiple applications in various scientific areas. We studied the thermal and photochemical reactions of an azocompound with photo-induced antibiotic properties using calculations based on Kohn-Shan, Spin-Flip and time-dependent Density Functional Theory. Our primary goal is to understand the absorption spectra and isomerization pathways governing the molecule's light-controlled antibiotic activity. The nuclear ensemble approach was used for the most stable and isomers, and the absorption spectra were calculated and fitted to predict the / isomer ratios in the carboxylate form, using experimental measurements as a reference. We stablished that rotation is involved in the most favorable ↔ and trans↔ thermal isomerization pathways, while the inversion mechanism is the most likely for isomerizations. We found that the photochemical ↔ isomerization follows a consistent mechanism across all isomers, involving excitation to , an in-plane ultrafast internal conversion to , followed by rotation of the bond up to a twisted conical intersection. We used a custom approach to evaluate the most favorable decay pathway from the conical intersections to and photoproducts using static calculations.

摘要

由于偶氮化合物在各个科学领域有多种应用,它们是最重要的分子光开关组之一。我们基于科恩 - 沈(Kohn-Shan)、自旋翻转和含时密度泛函理论进行计算,研究了一种具有光诱导抗生素特性的偶氮化合物的热反应和光化学反应。我们的主要目标是了解控制该分子光控抗生素活性的吸收光谱和异构化途径。对于最稳定的异构体,采用了核系综方法,并计算和拟合吸收光谱,以实验测量为参考来预测羧酸盐形式下的顺反异构体比例。我们确定旋转参与了最有利的顺反和反式顺反热异构化途径,而反转机制最有可能参与顺反异构化。我们发现光化学顺反异构化在所有顺反异构体中遵循一致的机制,包括激发到单线态,面内超快内转换到三线态,然后碳氮双键旋转直至扭曲的锥形交叉点。我们使用一种定制方法,通过静态计算评估从锥形交叉点到顺式和反式光产物的最有利衰变途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce51/12392295/3dfa164d8763/nihms-2082817-f0001.jpg

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