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用于调控人类细胞中ATP/ADP比率的基因编码工具。

Genetically encoded tool for manipulation of ATP/ADP ratio in human cells.

作者信息

Ekvik Alex E, Kober Megan M, Titov Denis V

机构信息

Department of Nutritional Sciences & Toxicology, University of California, Berkeley, CA, USA.

Center for Computational Biology, University of California, Berkeley, CA, USA.

出版信息

bioRxiv. 2025 Aug 23:2025.08.12.670003. doi: 10.1101/2025.08.12.670003.

Abstract

The ability of cells to power energy-demanding processes depends on maintaining the ATP hydrolysis reaction a billion-fold away from equilibrium. Cells respond to changes in energy state by sensing changes in ATP, ADP, AMP, and inorganic phosphate. A key barrier to a better understanding of the maintenance of energy homeostasis is a lack of tools for direct manipulation of energy state in living cells. Here, we report the development of ATPGobble-a genetically encoded tool for controlling cellular ATP hydrolysis rate. We validated ATPGobble by showing that it doubles the energy demand, decreases [ATP]/[ADP] and [ATP]/[AMP] ratios, and activates AMPK activity in human cells. We then used ATPGobble to systematically characterize the proteome and phosphoproteome changes caused by direct manipulation of the energy state. Our results establish ATPGobble as a powerful approach for dissecting the regulatory roles of energy state in human cells, opening new opportunities to study how cellular energy state governs physiology, stress responses, and disease processes.

摘要

细胞为高耗能过程提供能量的能力取决于将ATP水解反应维持在远离平衡状态十亿倍的水平。细胞通过感知ATP、ADP、AMP和无机磷酸的变化来响应能量状态的改变。深入理解能量稳态维持机制的一个关键障碍是缺乏在活细胞中直接操纵能量状态的工具。在此,我们报告了ATPGobble的开发——一种用于控制细胞ATP水解速率的基因编码工具。我们通过证明它使能量需求加倍、降低[ATP]/[ADP]和[ATP]/[AMP]比值以及激活人类细胞中的AMPK活性来验证了ATPGobble。然后,我们使用ATPGobble系统地表征了直接操纵能量状态所引起的蛋白质组和磷酸化蛋白质组的变化。我们的结果确立了ATPGobble作为剖析能量状态在人类细胞中的调节作用的有力方法,为研究细胞能量状态如何控制生理、应激反应和疾病过程开辟了新机会。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/64f7/12393285/4f731919db1f/nihpp-2025.08.12.670003v2-f0001.jpg

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