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非生物环境条件决定了盐沼细菌中的噬菌体抗性结果。

Abiotic environmental conditions determine phage resistance outcomes in a salt-marsh bacterium.

作者信息

Silk Ella, Harding Kate, Mahler Marina, Fineran Peter C, Meaden Sean

机构信息

Department of Microbiology and Immunology, University of Otago, Dunedin 9016, New Zealand.

Department of Medicine, University of Otago, Christchurch 8140, New Zealand.

出版信息

Philos Trans R Soc Lond B Biol Sci. 2025 Sep 4;380(1934):20240071. doi: 10.1098/rstb.2024.0071.


DOI:10.1098/rstb.2024.0071
PMID:40904110
Abstract

Phages exert strong selective pressure on bacterial hosts, yet the role of abiotic factors in resistance evolution is often overlooked. Abiotic effects can shape both demographic factors, such as encounter rates, and trade-offs between resistance and fitness. We used the salt-marsh bacterium (a.k.a. sp. ATCC 39006) to examine how salt concentration shapes resistance evolution after exposure to a virulent myovirus phage (LC53), which infects via an outer membrane protein (OmpW). We find that resistance only emerges under low-salt conditions via mutations in the regulatory region upstream of or within . This effect was independent of phage type or receptor utilization, as similar resistance patterns appeared when using a flagella-tropic siphovirus (JS26). These findings suggest that indirect effects influenced by salt, such as bacterial and phage population sizes and encounter rates, play a crucial role. Overall, these results may help explain patterns of bacterial and phage genomic diversity in natural microbial communities, with consequences for predicting phage resistance evolution in applied contexts, such as phage therapy and the food industry.This article is part of the discussion meeting issue 'The ecology and evolution of bacterial immune systems'.

摘要

噬菌体对细菌宿主施加强大的选择压力,但非生物因素在抗性进化中的作用常常被忽视。非生物效应既能塑造诸如接触率等种群统计学因素,也能影响抗性与适应性之间的权衡。我们利用盐沼细菌(又称sp. ATCC 39006)来研究盐浓度如何在暴露于一种烈性肌尾噬菌体(LC53)后塑造抗性进化,该噬菌体通过外膜蛋白(OmpW)进行感染。我们发现,只有在低盐条件下,抗性才会通过或内调控区域的突变而出现。这种效应与噬菌体类型或受体利用无关,因为使用鞭毛嗜性长尾噬菌体(JS26)时会出现类似的抗性模式。这些发现表明,盐所影响的间接效应,如细菌和噬菌体种群大小及接触率,起着关键作用。总体而言,这些结果可能有助于解释自然微生物群落中细菌和噬菌体基因组多样性的模式,对预测噬菌体疗法和食品工业等应用环境中的噬菌体抗性进化具有重要意义。本文是“细菌免疫系统的生态学与进化”讨论会议题的一部分。

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引用本文的文献

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Preface: the ecology and evolution of bacterial immune systems.

Philos Trans R Soc Lond B Biol Sci. 2025-9-4

本文引用的文献

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Phage arabinosyl-hydroxy-cytosine DNA modifications result in distinct evasion and sensitivity responses to phage defense systems.

Cell Host Microbe. 2025-7-9

[2]
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Nucleic Acids Res. 2025-1-24

[3]
Prediction of strain level phage-host interactions across the Escherichia genus using only genomic information.

Nat Microbiol. 2024-11

[4]
A host of armor: Prokaryotic immune strategies against mobile genetic elements.

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[5]
Suboptimal environmental conditions prolong phage epidemics in bacterial populations.

Mol Ecol. 2024-5

[6]
Developing Phage Therapy That Overcomes the Evolution of Bacterial Resistance.

Annu Rev Virol. 2023-9-29

[7]
An OmpW-dependent T4-like phage infects sp. ATCC 39006.

Microb Genom. 2023-3

[8]
A lipopolysaccharide-dependent phage infects a pseudomonad phytopathogen and can evolve to evade phage resistance.

Environ Microbiol. 2022-10

[9]
Mitigation of evolved bacterial resistance to phage therapy.

Curr Opin Virol. 2022-4

[10]
Type I CRISPR-Cas provides robust immunity but incomplete attenuation of phage-induced cellular stress.

Nucleic Acids Res. 2022-1-11

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