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通过机器学习和免疫浸润对肺动脉高压中与二硫键连接的细胞程序性坏死相关基因进行综合分析:聚焦USP32和ZNF655作为关键调节因子

Comprehensive analysis of disulfidptosis-related genes in pulmonary hypertension through machine learning and immune infiltration: Spotlight on USP32 and ZNF655 as key regulators.

作者信息

Chen Riken, Guo Dingyu, Pan Jiahua, Pang Lingpin, Sun Jie, Xian Qian, Huang Tao, Cheng Junfen, Huang Jihuang, Zeng Xianbing, Yang Guojun, Qi Shiyan, Chen Wenliang, Sun Xishi

机构信息

Respiratory and Critical Care Medicine, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.

Emergency Medicine Center, Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.

出版信息

PLoS One. 2025 Sep 9;20(9):e0330832. doi: 10.1371/journal.pone.0330832. eCollection 2025.

Abstract

BACKGROUND

Disulfidptosis, a novel cellular death manner, has yet to be fully explored within the context of pulmonary arterial hypertension (PAH). This study aims to identify genes implicated in PAH that are involved in disulfidptosis.

METHOD

Based on data from the GEO database, this study employed co-expression analysis, Weighted Gene Co-Expression Network Analysis (WGCNA), hub gene identification, and Gene Set Enrichment Analysis (GSEA) to uncover genes associated with PAH and disulfidptosis. Subsequent machine learning validation and functional GSEA further refined the identification of pivotal genes. The investigation extended to examining immune cell involvement via immune infiltration techniques and elucidates the hub genes' roles within ceRNA networks.

RESULT

The integrative approach of co-expression analysis and WGCNA identified genes at the intersection of PAH and disulfidptosis. GSEA revealed their roles in essential biological processes and pathways, such as mRNA processing and cytoplasmic DNA sensing pathway. Prominently, USP32 and ZNF655 were identified as significant hub genes through machine learning analysis, demonstrating notable diagnostic potential across various datasets. Further, immune infiltration studies and ceRNA regulatory network construction revealed the intricate association between these genes and differential immune cell expression, alongside miRNA and lncRNA regulatory networks.

CONCLUSIONS

This study elucidates the contributory role of USP32 and ZNF655 in the pathogenesis of PAH, making them as critical genes within the disulfidptosis pathway.

摘要

背景

二硫化物诱导的细胞死亡是一种新型的细胞死亡方式,在肺动脉高压(PAH)的背景下尚未得到充分研究。本研究旨在鉴定参与PAH且与二硫化物诱导的细胞死亡相关的基因。

方法

基于来自基因表达综合数据库(GEO数据库)的数据,本研究采用共表达分析、加权基因共表达网络分析(WGCNA)、枢纽基因鉴定和基因集富集分析(GSEA)来揭示与PAH和二硫化物诱导的细胞死亡相关的基因。随后的机器学习验证和功能性GSEA进一步完善了关键基因的鉴定。该研究还通过免疫浸润技术扩展到检查免疫细胞的参与情况,并阐明枢纽基因在竞争性内源RNA(ceRNA)网络中的作用。

结果

共表达分析和WGCNA的综合方法确定了PAH和二硫化物诱导的细胞死亡交叉点上的基因。GSEA揭示了它们在重要生物学过程和途径中的作用,如mRNA加工和细胞质DNA传感途径。值得注意的是,通过机器学习分析确定USP32和ZNF655为重要的枢纽基因,在各种数据集中显示出显著的诊断潜力。此外,免疫浸润研究和ceRNA调控网络构建揭示了这些基因与不同免疫细胞表达之间的复杂关联,以及与微小RNA(miRNA)和长链非编码RNA(lncRNA)调控网络的关系。

结论

本研究阐明了USP32和ZNF655在PAH发病机制中的作用,使其成为二硫化物诱导的细胞死亡途径中的关键基因。

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