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整合网络毒理学和分子对接揭示4-壬基酚在乳腺癌发病机制中的多方面作用机制。

Integrative network toxicology and molecular docking reveal 4-Nonylphenol's multifaceted mechanisms in breast cancer pathogenesis.

作者信息

Jia Congli, Yang Fu

机构信息

Department of Plastic Surgery, Plastic Surgery Hospital of Shandong Second Medical University, Weifang, Shandong, China.

Department of Hepatobiliary Surgery, The First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, China.

出版信息

PLoS One. 2025 Sep 9;20(9):e0331944. doi: 10.1371/journal.pone.0331944. eCollection 2025.

Abstract

OBJECTIVE

This study employs integrated network toxicology and molecular docking to investigate the molecular basis underlying 4-nonylphenol (4-NP)-mediated enhancement of breast cancer susceptibility.

METHODS

We integrated data from multiple databases, including ChEMBL, STITCH, Swiss Target Prediction, GeneCards, OMIM and TTD. Core compound-disease-associated target genes were identified through Protein-Protein Interaction (PPI) network analysis. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were subsequently employed to elucidate the potential molecular functions and biological pathways associated with these key targets. Molecular docking using AutoDock Vina was conducted to investigate the binding interactions between the core genes and 4-NP. Furthermore, the miRDB database was utilized to identify potential microRNAs (miRNAs) that may exert regulatory control over the pivotal genes.

RESULTS

Five hub breast cancer target genes associated with 4-NP exposure were screened, containing TP53, HDAC1, ESR1, CTNNB1 and MYC. GO and KEGG analyses revealed that intersecting genes mainly influenced PI3K-Akt signaling, MicroRNAs in cancer, Chemical carcinogenesis-receptor activation and MAPK signaling. Molecular docking confirmed strong binding affinities of 4-NP to these hub genes. Subsequently several high-confidence candidate regulatory miRNAs especially miR-22, -148a, -181a and -152 were identified that shed light on miRNA regulatory mechanisms by which 4-NP increases breast cancer risk.

CONCLUSION

Our study demonstrates that 4-NP exposure perturbs protein conformational of hub targets, activating cascades and dysregulating signaling pathway to potentiate breast cancer risk. Furthermore, we identify a novel miRNA-mediated regulatory axis alongside MAPK signaling as critical mechanisms underpinning 4-NP toxicity.

摘要

目的

本研究采用综合网络毒理学和分子对接技术,探讨4-壬基酚(4-NP)介导的乳腺癌易感性增强的分子基础。

方法

我们整合了来自多个数据库的数据,包括ChEMBL、STITCH、瑞士靶点预测、基因卡、在线人类孟德尔遗传数据库(OMIM)和治疗靶点数据库(TTD)。通过蛋白质-蛋白质相互作用(PPI)网络分析确定核心化合物-疾病相关靶基因。随后采用基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析,以阐明与这些关键靶点相关的潜在分子功能和生物学途径。使用AutoDock Vina进行分子对接,以研究核心基因与4-NP之间的结合相互作用。此外,利用miRDB数据库鉴定可能对关键基因发挥调控作用的潜在微小RNA(miRNA)。

结果

筛选出5个与4-NP暴露相关的乳腺癌核心靶基因,包括TP53、HDAC1、ESR1、CTNNB1和MYC。GO和KEGG分析表明,交集基因主要影响PI3K-Akt信号通路、癌症中的微小RNA、化学致癌-受体激活和MAPK信号通路。分子对接证实4-NP与这些核心基因具有很强的结合亲和力。随后鉴定出几个高置信度的候选调控miRNA,特别是miR-22、-148a、-181a和-152,它们揭示了4-NP增加乳腺癌风险的miRNA调控机制。

结论

我们的研究表明,4-NP暴露扰乱了核心靶点的蛋白质构象,激活级联反应并失调信号通路,从而增加乳腺癌风险。此外,我们确定了一个新的miRNA介导的调控轴以及MAPK信号通路,作为4-NP毒性的关键机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e008/12419657/c87237d4f7e0/pone.0331944.g001.jpg

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