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生命周期与单子叶 - 双子叶谱系对被子植物基因组大小 - 性状关系的交互作用:一项系统发育信息分析

Interactive effects of life cycle and monocot-dicot lineage on genome size-trait relationships in angiosperms: a phylogenetically informed analysis.

作者信息

Liu Guolan, Wen Yin, Fu Peili, Cao Qiqi, Cui Qian, Du Wen, Chen Hao, Zhao Wanli

机构信息

Shandong Key Laboratory of Eco-Environmental Science for Yellow River Delta, Shandong University of Aeronautics, Binzhou, Shandong, China.

Key Laboratory of Agro-Ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha, Hunan, China.

出版信息

Front Plant Sci. 2025 Aug 29;16:1647198. doi: 10.3389/fpls.2025.1647198. eCollection 2025.

Abstract

INTRODUCTION

Genome size in angiosperms exhibits extraordinary variation, influencing a wide array of biological and ecological characteristics. Although prior studies have established links between genome size and certain functional traits, how the interaction between two fundamental axes of angiosperm diversity-life cycle (annual vs. perennial) and monocot-dicot distinction-shapes group-specific variation in genome size and its relationship with plant functional traits remains insufficiently understood.

METHODS

We assembled a comprehensive dataset encompassing 2,285 angiosperm species from 186 families, measuring genome size (1C-value) and monoploid genome size (1Cx-value) to account for polyploidy, as well as key size-related traits, including plant height and the length and width of leaves, flowers, fruits, and seeds. To evaluate the relationships between genome size and these functional traits while controlling for shared evolutionary history, we conducted phylogenetic generalized least squares (PGLS) analyses.

RESULTS

The results indicated that the interaction between life cycle and monocot-dicot distinction is a primary determinant of both 1C and 1Cx variation, with perennial monocots exhibiting the largest 1C and 1Cx values and a significant interactive effect between these two axes of diversity. Patterns of correlation between genome size metrics (1C, 1Cx) and functional traits are group-specific and sometimes reversed, reflecting divergent adaptive strategies-for example, genome size (1C) is positively correlated with plant height in annuals but negatively in perennials. Phylogenetic correction revealed that some associations, such as the negative correlation between genome size and plant height in perennials, are largely driven by shared ancestry and disappear after accounting for phylogeny, whereas others, such as the positive correlation between genome size (1C, 1Cx) and petal length, remain robust across groups, indicating a conserved adaptive relationship. The use of 1Cx confirmed that observed patterns reflect fundamental genome architecture rather than solely polyploidy effects.

DISCUSSION

These findings demonstrate that the interplay between life cycle and monocot-dicot distinction fundamentally shapes genome size (1C, 1Cx)-trait relationships in angiosperms, providing new insights into the evolutionary and adaptive mechanisms underlying plant diversity.

摘要

引言

被子植物的基因组大小呈现出极大的变异,影响着一系列生物学和生态学特征。尽管先前的研究已经确立了基因组大小与某些功能性状之间的联系,但被子植物多样性的两个基本轴——生命周期(一年生与多年生)和单子叶植物与双子叶植物的区分——之间的相互作用如何塑造基因组大小的群体特异性变异及其与植物功能性状的关系,仍未得到充分理解。

方法

我们收集了一个综合数据集,涵盖来自186个科的2285种被子植物,测量了基因组大小(1C值)和单倍体基因组大小(1Cx值)以考虑多倍体情况,以及与大小相关的关键性状,包括株高、叶、花、果实和种子的长度与宽度。为了在控制共同进化历史的同时评估基因组大小与这些功能性状之间的关系,我们进行了系统发育广义最小二乘法(PGLS)分析。

结果

结果表明,生命周期和单子叶植物与双子叶植物的区分之间的相互作用是1C和1Cx变异的主要决定因素,多年生单子叶植物表现出最大的1C和1Cx值,并且这两个多样性轴之间存在显著的交互作用。基因组大小指标(1C、1Cx)与功能性状之间的相关模式具有群体特异性,有时甚至相反,反映了不同的适应策略——例如,基因组大小(1C)在一年生植物中与株高呈正相关,而在多年生植物中呈负相关。系统发育校正表明,一些关联,如多年生植物中基因组大小与株高的负相关,在很大程度上是由共同祖先驱动的,在考虑系统发育后消失,而其他一些关联,如基因组大小(1C、1Cx)与花瓣长度的正相关,在各群体中仍然稳健,表明存在保守的适应关系。使用1Cx证实,观察到的模式反映了基本的基因组结构,而不仅仅是多倍体效应。

讨论

这些发现表明,生命周期和单子叶植物与双子叶植物的区分之间的相互作用从根本上塑造了被子植物中基因组大小(1C、1Cx)与性状的关系,为植物多样性背后的进化和适应机制提供了新的见解。

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