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指导精准医学的综合肿瘤生物标志物框架

A Comprehensive Oncological Biomarker Framework Guiding Precision Medicine.

作者信息

Mokhtari Reza Bayat, Sambi Manpreet, Shekari Faezeh, Satari Kosar, Ghafoury Roya, Ashayeri Neda, Eversole Paige, Baluch Narges, Harless William W, Muscarella Lucia Anna, Yeger Herman, Das Bikul, Szewczuk Myron R, Chakraborty Sayan

机构信息

Department of Pharmacology and Therapeutics, Roswell Park Comprehensive Cancer Center, 265 Elm and Carlton Streets, Buffalo, NY 14263, USA.

Program of Developmental Therapeutics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14263, USA.

出版信息

Biomolecules. 2025 Sep 10;15(9):1304. doi: 10.3390/biom15091304.

DOI:10.3390/biom15091304
PMID:41008611
Abstract

Cancer remains a major cause of mortality worldwide, driving ongoing innovation in therapeutic strategies. Immunotherapy has transformed cancer care by leveraging the immune system to target tumors, but its effectiveness is limited by tumor heterogeneity, immune resistance, and unpredictable toxicities. Moreover, the absence of robust biomarkers to predict therapeutic response and manage adverse effects remains a significant challenge. Recent advances in biomarker discovery, including liquid biopsy technologies and gut microbiota profiling, are enhancing the precision of immunotherapy and enabling more personalized cancer management. Here, we present a Comprehensive Oncological Biomarker Framework that integrates genetic and molecular testing, imaging, histopathology, multi-omics, and liquid biopsy to generate a molecular fingerprint for each patient. This holistic approach supports individualized diagnosis, prognosis, treatment selection, and response monitoring. Incorporating emerging biomarkers, such as microbiome signatures, further refines patient stratification, guiding the optimization of therapy. By uniting molecular insights with clinical and social factors, this framework aims to address tumor heterogeneity and immune evasion, ultimately improving patient outcomes through precision oncology.

摘要

癌症仍然是全球主要的死亡原因,推动着治疗策略的不断创新。免疫疗法通过利用免疫系统靶向肿瘤改变了癌症治疗方式,但其有效性受到肿瘤异质性、免疫抗性和不可预测的毒性的限制。此外,缺乏强大的生物标志物来预测治疗反应和管理不良反应仍然是一项重大挑战。生物标志物发现方面的最新进展,包括液体活检技术和肠道微生物群分析,正在提高免疫疗法的精准度,并实现更个性化的癌症管理。在此,我们提出了一个综合肿瘤生物标志物框架,该框架整合了基因和分子检测、成像、组织病理学、多组学和液体活检,为每位患者生成分子指纹。这种整体方法支持个性化诊断、预后评估、治疗选择和反应监测。纳入新兴生物标志物,如微生物组特征,进一步优化患者分层,指导治疗优化。通过将分子见解与临床和社会因素相结合,该框架旨在解决肿瘤异质性和免疫逃逸问题,最终通过精准肿瘤学改善患者预后。

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A Comprehensive Oncological Biomarker Framework Guiding Precision Medicine.指导精准医学的综合肿瘤生物标志物框架
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本文引用的文献

1
Single-cell transcriptomic analysis reveals gut microbiota-immunotherapy synergy through modulating tumor microenvironment.单细胞转录组分析揭示肠道微生物群与免疫疗法通过调节肿瘤微环境产生协同作用。
Signal Transduct Target Ther. 2025 May 2;10(1):140. doi: 10.1038/s41392-025-02226-7.
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The impact of gut microbial short-chain fatty acids on colorectal cancer development and prevention.肠道微生物短链脂肪酸对结直肠癌发生发展及预防的影响
Gut Microbes. 2025 Dec;17(1):2483780. doi: 10.1080/19490976.2025.2483780. Epub 2025 Apr 6.
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An Agrin-YAP/TAZ Rigidity Sensing Module Drives EGFR-Addicted Lung Tumorigenesis.
一种聚集蛋白-YAP/TAZ刚性感应模块驱动对表皮生长因子受体(EGFR)成瘾的肺癌发生。
Adv Sci (Weinh). 2025 May;12(20):e2413443. doi: 10.1002/advs.202413443. Epub 2025 Mar 31.
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Gut microbiota as a new target for anticancer therapy: from mechanism to means of regulation.肠道微生物群作为抗癌治疗的新靶点:从作用机制到调控手段
NPJ Biofilms Microbiomes. 2025 Mar 11;11(1):43. doi: 10.1038/s41522-025-00678-x.
5
Gut Microbiota-Tumor Microenvironment Interactions: Mechanisms and Clinical Implications for Immune Checkpoint Inhibitor Efficacy in Cancer.肠道微生物群与肿瘤微环境的相互作用:对癌症免疫检查点抑制剂疗效的机制及临床意义
Cancer Manag Res. 2025 Jan 25;17:171-192. doi: 10.2147/CMAR.S405590. eCollection 2025.
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Intestinal Akkermansia muciniphila complements the efficacy of PD1 therapy in MAFLD-related hepatocellular carcinoma.肠道嗜黏蛋白阿克曼氏菌可增强PD1疗法对MAFLD相关肝细胞癌的疗效。
Cell Rep Med. 2025 Jan 21;6(1):101900. doi: 10.1016/j.xcrm.2024.101900. Epub 2025 Jan 10.
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ATLAS-seq: a microfluidic single-cell TCR screen for antigen-reactive TCRs.ATLAS-seq:一种用于抗原反应性T细胞受体的微流控单细胞TCR筛选方法
Nat Commun. 2025 Jan 2;16(1):216. doi: 10.1038/s41467-024-54675-3.
8
Extracellular vesicles as a promising biomarker resource in liquid biopsy for cancer.细胞外囊泡作为液体活检中一种很有前景的癌症生物标志物来源。
Extracell Vesicles Circ Nucl Acids. 2021 May 13;2(2):148-174. doi: 10.20517/evcna.2021.06. eCollection 2021.
9
Advances in DLL3-targeted therapies for small cell lung cancer: challenges, opportunities, and future directions.小细胞肺癌DLL3靶向治疗的进展:挑战、机遇与未来方向。
Front Oncol. 2024 Dec 5;14:1504139. doi: 10.3389/fonc.2024.1504139. eCollection 2024.
10
The Human Pathology Atlas for deciphering the prognostic features of human cancers.用于解读人类癌症预后特征的人类病理学图谱。
EBioMedicine. 2025 Jan;111:105495. doi: 10.1016/j.ebiom.2024.105495. Epub 2024 Dec 10.