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T-T摆动配对导致DNA双螺旋局部不稳定。

Local destabilisation of a DNA double helix by a T--T wobble pair.

作者信息

Cornelis A G, Haasnoot J H, den Hartog J F, de Rooij M, van Boom J H, Cornelis A

出版信息

Nature. 1979 Sep 20;281(5728):235-6. doi: 10.1038/281235a0.

DOI:10.1038/281235a0
PMID:481593
Abstract

Nuclear magnetic resonance is a technique which permits direct observation of the Waton--Click hydrogen-bonded ring imino protons (guanine N1H and thymine N3H). As the formation and disruption of hydrogen bonds of double-helical RNA and DNA structures are key events during various biological processes, NMR thus provides a useful tool for studying the fluctuational mobility of the individual base pairs. Indeed, several NMR studies of oligo- and polynucleotides have been carried out to probe the structure and dynamics of nucleic acids in solution (for a review see ref. 1). The present study constitutes the first part of our attempt to assess the influence of non-complementary base pairs on the stability of nucleic acid double helices. We report the spectral assignment and temperature-dependent NMR profiles of the hydrogen-bonded imino protons of the two DNA fragments shown in Fig. 1. The assignment is based solely on experimental grounds using the principle of chemical modification. It will be demonstrated that the introduction of a non-complementary (wobble) base pair in a DNA duplex introduces an extra melting site in addition to the sequential melting which starts with the terminal base pairs in the double helix structure.

摘要

核磁共振是一种能够直接观测沃森-克里克氢键连接环亚氨基质子(鸟嘌呤N1H和胸腺嘧啶N3H)的技术。由于双螺旋RNA和DNA结构中氢键的形成与断裂是各种生物过程中的关键事件,因此核磁共振为研究单个碱基对的波动流动性提供了一个有用的工具。实际上,已经开展了多项针对寡核苷酸和多核苷酸的核磁共振研究,以探究溶液中核酸的结构与动力学(综述见参考文献1)。本研究是我们评估非互补碱基对对核酸双螺旋稳定性影响的首次尝试的第一部分。我们报告了图1所示两个DNA片段中氢键连接亚氨基质子的光谱归属及温度依赖性核磁共振谱图。该归属完全基于使用化学修饰原理的实验依据。结果将表明,在DNA双链体中引入一个非互补(摆动)碱基对,除了从双螺旋结构末端碱基对开始的顺序解链外,还会引入一个额外的解链位点。

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Kinetics for exchange of imino protons in the d(C-G-C-G-A-A-T-T-C-G-C-G) double helix and in two similar helices that contain a G . T base pair, d(C-G-T-G-A-A-T-T-C-G-C-G), and an extra adenine, d(C-G-C-A-G-A-A-T-T-C-G-C-G).d(C-G-C-G-A-A-T-T-C-G-C-G)双螺旋以及包含一个G·T碱基对的两个类似螺旋d(C-G-T-G-A-A-T-T-C-G-C-G)和一个额外腺嘌呤的d(C-G-C-A-G-A-A-T-T-C-G-C-G)中亚氨基质子交换的动力学
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Base pairing structure in the poly d(G-T) double helix: wobble base pairs.聚d(G-T)双螺旋中的碱基配对结构:摆动碱基对。
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Targeted nucleotide repair of cyc1 mutations in Saccharomyces cerevisiae directed by modified single-stranded DNA oligonucleotides.经修饰的单链DNA寡核苷酸介导的酿酒酵母中cyc1突变的靶向核苷酸修复
Genetics. 2003 Feb;163(2):527-38. doi: 10.1093/genetics/163.2.527.
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DNA pairing is an important step in the process of targeted nucleotide exchange.DNA配对是靶向核苷酸交换过程中的重要一步。
Nucleic Acids Res. 2003 Feb 1;31(3):899-910. doi: 10.1093/nar/gkg171.
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Recognition of DNA alterations by the mismatch repair system.错配修复系统对DNA改变的识别。
Biochem J. 1999 Feb 15;338 ( Pt 1)(Pt 1):1-13.
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Structure of a mispaired RNA double helix at 1.6-A resolution and implications for the prediction of RNA secondary structure.分辨率为1.6埃的错配RNA双螺旋结构及其对RNA二级结构预测的意义
Proc Natl Acad Sci U S A. 1994 May 10;91(10):4160-4. doi: 10.1073/pnas.91.10.4160.
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Loopstructures in synthetic oligodeoxynucleotides.合成寡脱氧核苷酸中的环结构。
Nucleic Acids Res. 1980 Jan 11;8(1):169-81. doi: 10.1093/nar/8.1.169.
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Nucleic Acids Res. 1981 Dec 11;9(23):6553-69. doi: 10.1093/nar/9.23.6553.
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