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蛋白质中核磁共振位移探针的硝基酪氨酸螯合:应用于牛胰蛋白酶抑制剂

Nitrotyrosine chelation of nuclear magnetic resonance shift probes in proteins: application to bovine pancreatic trypsin inhibitor.

作者信息

Marinetti T D, Snyder G H, Sykes B D

出版信息

Biochemistry. 1977 Feb 22;16(4):647-53. doi: 10.1021/bi00623a015.

DOI:10.1021/bi00623a015
PMID:556950
Abstract

The interactions of Pr(III) and Eu(III) with specifically nitrated derivatives of the basic bovine pancreatic trypsin inhibitor have been studied using optical spectroscopy and nuclear magnetic resonance (NMR) at 250 and 270 MHz. Stability constants for proton and metal binding to nitrotyrosines 10 and 21 determined optically are in good agreement with those from NMR. Observations of the Eu(III)-induced NMR shifts of the ring protons of nitrotyrosine 21 allowed calibration of the magnetic interactions for this binding site. The Pr(III)-induced shifts for several resolved nonexchangeable backbone proton resonances were compared with calculated shifts using the known x-ray structure. With several simplifying assumptions, the Pr(III)-induced shifts were used to assign one alpha-CH and five NH protons to compatible sets of backbone positions which are consistent with the known pH dependence and resistance to exchange with solvent D2O. Some of the more general aspects of lanthanide-induced shifts are discussed with reference to their use in proteins. Due to the complexities of the analysis of the shift data, the most straightforward use of this technique is in conjunction with the relaxation probe Gd(III) for measurement of intramolecular distances.

摘要

利用光学光谱法以及在250和270兆赫下的核磁共振(NMR)技术,研究了Pr(III)和Eu(III)与碱性牛胰蛋白酶抑制剂的特定硝化衍生物之间的相互作用。通过光学方法测定的质子和金属与硝基酪氨酸10和21结合的稳定常数,与核磁共振得出的结果高度一致。对Eu(III)诱导的硝基酪氨酸21环质子的核磁共振位移的观察,使得能够校准该结合位点的磁相互作用。将Pr(III)诱导的几个已解析的非交换主链质子共振的位移,与使用已知x射线结构计算出的位移进行了比较。在做出几个简化假设的情况下,Pr(III)诱导的位移被用于将一个α-CH和五个NH质子分配到与已知pH依赖性和对溶剂D2O交换的抗性相一致的主链位置兼容组中。结合镧系元素诱导位移在蛋白质中的应用,讨论了其一些更普遍的方面。由于位移数据分析的复杂性,该技术最直接的用途是与弛豫探针Gd(III)结合使用,以测量分子内距离。

相似文献

1
Nitrotyrosine chelation of nuclear magnetic resonance shift probes in proteins: application to bovine pancreatic trypsin inhibitor.蛋白质中核磁共振位移探针的硝基酪氨酸螯合:应用于牛胰蛋白酶抑制剂
Biochemistry. 1977 Feb 22;16(4):647-53. doi: 10.1021/bi00623a015.
2
Nuclear magnetic resonance determination of intramolecular distances in bovine pancreatic trypsin inhibitor using nitrotyrosine chelation of lanthanides.利用镧系元素的硝基酪氨酸螯合作用通过核磁共振测定牛胰蛋白酶抑制剂的分子内距离
Biochemistry. 1976 Oct 19;15(21):4600-8. doi: 10.1021/bi00666a009.
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Ring current effects in the conformation dependent NMR chemical shifts of aliphatic protons in the basic pancreatic trypsin inhibitor.碱性胰蛋白酶抑制剂中脂肪族质子的构象依赖性核磁共振化学位移中的环电流效应
Biochim Biophys Acta. 1979 Feb 26;576(2):409-23. doi: 10.1016/0005-2795(79)90416-1.
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A study of the lysyl residues in the basic pancreatic trypsin inhibitor using 1H nuclear magnetic resonance at 360 Mhz.一项使用360兆赫的1H核磁共振研究碱性胰腺胰蛋白酶抑制剂中的赖氨酰残基。
Eur J Biochem. 1976 Feb 2;62(1):103-7. doi: 10.1111/j.1432-1033.1976.tb10102.x.
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[Determination and comparative analysis of the conformation of bovine pancreatic trypsin inhibitor and trypsin inhibitors E and K from the data of two-dimensional 1H-NMR spectroscopy].[根据二维¹H-NMR光谱数据对牛胰蛋白酶抑制剂以及E和K胰蛋白酶抑制剂构象的测定与比较分析]
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Complete tyrosine assignments in the high field 1H nuclear magnetic resonance spectrum of the bovine pancreatic trypsin inhibitor.牛胰蛋白酶抑制剂高场1H核磁共振谱中酪氨酸的完整归属
Biochemistry. 1975 Aug 26;14(17):3765-77. doi: 10.1021/bi00688a008.
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Complete tyrosine assignments in the high-field 1H nuclear magnetic resonance spectrum of bovine pancreatic trypsin inhibitor selectively reduced and carboxamidomethylated at cystine 14-38.在牛胰蛋白酶抑制剂的高场¹H核磁共振谱中,对在14 - 38位胱氨酸处选择性还原和羧甲基化的牛胰蛋白酶抑制剂进行完整的酪氨酸归属。
Biochemistry. 1976 Jun 1;15(11):2275-83. doi: 10.1021/bi00656a005.
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The location of the calcium ion binding site in bovine alpha-trypsin and beta-trypsin using lanthanide ion probes.使用镧系离子探针确定牛α-胰蛋白酶和β-胰蛋白酶中钙离子结合位点的位置。
Biochemistry. 1975 Nov 4;14(22):4935-43. doi: 10.1021/bi00693a024.
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1H nuclear-magnetic-resonance studies of the porcine-pancreatic secretory trypsin inhibitor at 270 MHz.在270兆赫频率下对猪胰分泌型胰蛋白酶抑制剂进行的质子核磁共振研究。
Eur J Biochem. 1979 Dec;102(1):185-94. doi: 10.1111/j.1432-1033.1979.tb06279.x.
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Analysis of electrostatic interactions and their relationship to conformation and stability of bovine pancreatic trypsin inhibitor.牛胰蛋白酶抑制剂的静电相互作用及其与构象和稳定性关系的分析
Biochemistry. 1982 Oct 12;21(21):5241-51. doi: 10.1021/bi00264a020.

引用本文的文献

1
Strategies for the uses of lanthanide NMR shift probes in the determination of protein structure in solutio. Application to the EF calcium binding site of carp parvalbumin.用于在溶液中测定蛋白质结构的镧系元素核磁共振位移探针的使用策略。应用于鲤鱼小清蛋白的EF钙结合位点。
Biophys J. 1980 Oct;32(1):193-210. doi: 10.1016/S0006-3495(80)84933-2.