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大肠杆菌RNA聚合酶对多瘤病毒DNA的转录:离子强度对启动子选择的影响

Transcription of polyoma DNA by Escherichia coli RNA polymerase: influence of ionic strength on promoter selection.

作者信息

Dandolo L, Blangy D

出版信息

J Virol. 1980 Mar;33(3):927-35. doi: 10.1128/JVI.33.3.927-935.1980.

DOI:10.1128/JVI.33.3.927-935.1980
PMID:6245276
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC288625/
Abstract

The influence of ionic strength on transcription of polyoma DNA by Escherichia coli RNA polymerase was investigated. At 0.15 M KCl, transcription was highly symmetrical and, due to the lack of reinitiation, a limited extent of RNA synthesis was observed. When the concentration of KCl was raised to 0.45 M, the affinity of the enzyme for its template, as well as its apparent affinity for ribonucleoside triphosphates, was reduced. Under optimal conditions, the rate and extent of RNA synthesis at 0.45 M KCl were greater than at 0.15 M KCl, and transcription was mostly asymmetric. Binding and initiation sites at both ionic strengths were identified; at 0.15 M KCl, transcription was initiated from two major sites, located at 0.99 and 0.06 map unit, whereas at 0.45 M KCl, a unique initiation site, at 0.99 map unit, was selected by RNA polymerase.

摘要

研究了离子强度对大肠杆菌RNA聚合酶转录多瘤病毒DNA的影响。在0.15M KCl条件下,转录高度对称,由于缺乏重新起始,观察到RNA合成的程度有限。当KCl浓度提高到0.45M时,酶对其模板的亲和力以及对核糖核苷三磷酸的表观亲和力均降低。在最佳条件下,0.45M KCl时RNA合成的速率和程度大于0.15M KCl时,且转录大多是不对称的。确定了两种离子强度下的结合位点和起始位点;在0.15M KCl时,转录从位于0.99和0.06图谱单位的两个主要位点起始,而在0.45M KCl时,RNA聚合酶选择了位于0.99图谱单位的一个独特起始位点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c34e/288625/cf91a9ad02b9/jvirol00171-0016-b.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c34e/288625/c414c445af9f/jvirol00171-0014-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c34e/288625/19312961decf/jvirol00171-0014-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c34e/288625/86313847a0c3/jvirol00171-0015-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c34e/288625/8b96ff590e18/jvirol00171-0015-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c34e/288625/caf5f5f66cca/jvirol00171-0016-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c34e/288625/cf91a9ad02b9/jvirol00171-0016-b.jpg

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本文引用的文献

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The nucleotide sequence preceding an RNA polymerase initiation site on SV40 DNA. Part 2. The sequence of the early strand transcript.猴病毒40(SV40)DNA上RNA聚合酶起始位点之前的核苷酸序列。第2部分。早期链转录本的序列。
Nucleic Acids Res. 1974 Apr;1(4):595-611. doi: 10.1093/nar/1.4.595.
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The nucleotide sequence preceding an RNA polymerase initiation site on SV40 DNA. Part 1. The sequence of the late strand transcript.猴病毒40(SV40)DNA上RNA聚合酶起始位点之前的核苷酸序列。第1部分。晚期链转录本的序列。
Nucleic Acids Res. 1974 Apr;1(4):577-94. doi: 10.1093/nar/1.4.577.
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The binding of RNA polymerase to DNA.
RNA聚合酶与DNA的结合。
J Mol Biol. 1966 Oct 28;21(1):83-114. doi: 10.1016/0022-2836(66)90081-7.
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Effects of supercoiling on transcription from bacteriophage PM2 deoxyribonucleic acid.超螺旋对噬菌体PM2脱氧核糖核酸转录的影响。
Biochemistry. 1974 Jul 16;13(15):3164-9. doi: 10.1021/bi00712a025.
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Polyoma DNA: a physical map.多瘤病毒DNA:物理图谱
Proc Natl Acad Sci U S A. 1974 May;71(5):2077-81. doi: 10.1073/pnas.71.5.2077.
6
Nucleotide sequences of RNA transcribed in infected cells and by Escherichia coli RNA polymerase from a segment of simian virus 40 DNA.在受感染细胞中以及由大肠杆菌RNA聚合酶从猴病毒40 DNA的一个片段转录的RNA的核苷酸序列。
Proc Natl Acad Sci U S A. 1974 Feb;71(2):371-5. doi: 10.1073/pnas.71.2.371.
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Length measurements of RNA synthesized in vitro by Escherichia coli RNA polymerase.大肠杆菌RNA聚合酶体外合成RNA的长度测量
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8
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J Mol Biol. 1972 Sep 14;70(1):57-71. doi: 10.1016/0022-2836(72)90163-5.