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1
Does codon composition influence ribosome function?密码子组成会影响核糖体功能吗?
EMBO J. 1984 Jan;3(1):91-4. doi: 10.1002/j.1460-2075.1984.tb01766.x.
2
[Binding of the yeast phenylalanine tRNA with Escherichia coli ribosomes. Effect of the removal of a modified base from the 3'-end of the anticodon on codon-anticodon interaction].[酵母苯丙氨酸tRNA与大肠杆菌核糖体的结合。从反密码子3'-末端去除一个修饰碱基对密码子-反密码子相互作用的影响]
Mol Biol (Mosk). 1984 Nov-Dec;18(6):1486-96.
3
Codon choice and gene expression: synonymous codons differ in their ability to direct aminoacylated-transfer RNA binding to ribosomes in vitro.密码子选择与基因表达:同义密码子在体外指导氨酰化转运RNA与核糖体结合的能力上存在差异。
Proc Natl Acad Sci U S A. 1988 Jun;85(12):4242-6. doi: 10.1073/pnas.85.12.4242.
4
[Mechanism of codon-anticodon interaction in ribosomes. Interaction of aminoacyl-tRNA with 70S ribosomes in the absence of elongation factor EF-Tu and GTP].[核糖体中密码子-反密码子相互作用的机制。在没有延伸因子EF-Tu和GTP的情况下氨酰-tRNA与70S核糖体的相互作用]
Mol Biol (Mosk). 1981 Jul-Aug;15(4):779-89.
5
Rate of elongation of polyphenylalanine in vitro.聚苯丙氨酸体外延伸速率。
Eur J Biochem. 1982 Feb;122(1):193-7. doi: 10.1111/j.1432-1033.1982.tb05866.x.
6
Codon-specific and general inhibition of protein synthesis by the tRNA-sequestering minigenes.通过tRNA隔离小基因对蛋白质合成进行密码子特异性和一般性抑制。
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Selective charging of tRNA isoacceptors explains patterns of codon usage.tRNA 同工受体的选择性充电解释了密码子使用模式。
Science. 2003 Jun 13;300(5626):1718-22. doi: 10.1126/science.1083811.
8
Protein Synthesis in E. coli: Dependence of Codon-Specific Elongation on tRNA Concentration and Codon Usage.大肠杆菌中的蛋白质合成:密码子特异性延伸对tRNA浓度和密码子使用的依赖性。
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9
Codon choice and gene expression: synonymous codons differ in translational accuracy.密码子选择与基因表达:同义密码子在翻译准确性上存在差异。
Proc Natl Acad Sci U S A. 1989 Sep;86(18):6888-92. doi: 10.1073/pnas.86.18.6888.
10
Mechanism of codon-anticodon interaction in ribosomes: comparative study of interaction of Phe-tRNAPhe and N-acetyl-Phe-tRNAPhe with the donor site of Escherichia coli ribosomes.核糖体中密码子-反密码子相互作用的机制:苯丙氨酰-tRNA苯丙氨酸和N-乙酰苯丙氨酰-tRNA苯丙氨酸与大肠杆菌核糖体供体位点相互作用的比较研究。
FEBS Lett. 1981 Mar 9;125(1):15-9. doi: 10.1016/0014-5793(81)80986-6.

引用本文的文献

1
Differential Selection for Translation Efficiency Shapes Translation Machineries in Bacterial Species.细菌物种中翻译效率的差异选择塑造了翻译机制。
Microorganisms. 2024 Apr 10;12(4):768. doi: 10.3390/microorganisms12040768.
2
Does base-pairing strength play a role in microRNA repression?碱基配对强度是否在 microRNA 抑制中发挥作用?
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3
The anatomy of microbial cell state transitions in response to oxygen.微生物细胞对氧气响应的状态转变的剖析。
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4
The second to last amino acid in the nascent peptide as a codon context determinant.新生肽中倒数第二个氨基酸作为密码子上下文决定因素。
EMBO J. 1994 Jan 1;13(1):249-57. doi: 10.1002/j.1460-2075.1994.tb06255.x.
5
ppGpp inhibition of elongation factors Tu, G and Ts during polypeptide synthesis.在多肽合成过程中,鸟苷四磷酸(ppGpp)对延伸因子Tu、G和Ts的抑制作用。
Mol Gen Genet. 1984;197(1):36-45. doi: 10.1007/BF00327920.
6
Selection pressures on codon usage in the complete genome of bacteriophage T7.噬菌体T7全基因组密码子使用的选择压力
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7
Involvement of ribosomal protein L7/L12 in control of translational accuracy.核糖体蛋白L7/L12参与翻译准确性的调控。
Proc Natl Acad Sci U S A. 1985 Feb;82(3):717-21. doi: 10.1073/pnas.82.3.717.
8
Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes.酵母中的密码子使用情况:聚类分析能清晰区分高表达基因和低表达基因。
Nucleic Acids Res. 1986 Jul 11;14(13):5125-43. doi: 10.1093/nar/14.13.5125.
9
How do combinations of rpsL- and miaA- generate streptomycin dependence?rpsL和miaA的组合是如何产生链霉素依赖性的?
Mol Gen Genet. 1986 Feb;202(2):207-11. doi: 10.1007/BF00331638.
10
Codon usage and gene expression.密码子使用与基因表达。
Nucleic Acids Res. 1986 Apr 11;14(7):3075-87. doi: 10.1093/nar/14.7.3075.

本文引用的文献

1
Codon-specific missense errors in vivo.体内密码子特异性错义错误。
EMBO J. 1983;2(8):1351-6. doi: 10.1002/j.1460-2075.1983.tb01591.x.
2
Preferential codon usage in genes.基因中的密码子偏好性使用
Gene. 1981 May;13(4):355-64. doi: 10.1016/0378-1119(81)90015-9.
3
Does quantitative tRNA adaptation to codon content in mRNA optimize the ribosomal translation efficiency? Proposal for a translation system model.tRNA对mRNA密码子含量的定量适应是否能优化核糖体翻译效率?一种翻译系统模型的提议。
Biochimie. 1981 Mar;63(3):187-95. doi: 10.1016/s0300-9084(81)80192-7.
4
Rate of elongation of polyphenylalanine in vitro.聚苯丙氨酸体外延伸速率。
Eur J Biochem. 1982 Feb;122(1):193-7. doi: 10.1111/j.1432-1033.1982.tb05866.x.
5
Rapid purification of highly active ribosomes from Escherichia coli.从大肠杆菌中快速纯化高活性核糖体。
Anal Biochem. 1980 Jul 1;105(2):369-74. doi: 10.1016/0003-2697(80)90472-8.
6
Polypeptide elongation and tRNA cycling in Escherichia coli: a dynamic approach.大肠杆菌中的多肽延伸与tRNA循环:一种动态研究方法
FEBS Lett. 1980 Jun 30;115(2):151-5. doi: 10.1016/0014-5793(80)81155-0.
7
A simplified procedure for the isolation of bacterial polypeptide elongation factor EF-Tu.一种用于分离细菌多肽延伸因子EF-Tu的简化程序。
Anal Biochem. 1980 May 1;104(1):29-36. doi: 10.1016/0003-2697(80)90272-9.
8
Genetic distances from mRNA sequences.来自mRNA序列的遗传距离。
Naturwissenschaften. 1980 Feb;67(2):93-4. doi: 10.1007/BF01054695.
9
Is there proofreading during polypeptide synthesis?多肽合成过程中有校对机制吗?
EMBO J. 1982;1(6):741-5. doi: 10.1002/j.1460-2075.1982.tb01240.x.
10
Translation rates and misreading characteristics of rpsD mutants in Escherichia coli.大肠杆菌中rpsD突变体的翻译速率和误读特征
Mol Gen Genet. 1982;187(3):467-72. doi: 10.1007/BF00332630.

密码子组成会影响核糖体功能吗?

Does codon composition influence ribosome function?

作者信息

Andersson S G, Buckingham R H, Kurland C G

出版信息

EMBO J. 1984 Jan;3(1):91-4. doi: 10.1002/j.1460-2075.1984.tb01766.x.

DOI:10.1002/j.1460-2075.1984.tb01766.x
PMID:6368222
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC557302/
Abstract

Escherichia coli ribosomes pre-initiated with N-acetyl-Val-tRNAVal elongate strictly alternating poly(U-G) at a rate between eight and 12 peptide bonds per second per ribosome in vitro. Comparisons with poly(U)-primed poly(Phe) synthesis show that these systems function with the same rates which are close to those of protein synthesis in vivo. This indicates that, at least in vitro, codon composition has no marked influence on the speed of elongation when the concentration of ternary complex is saturating. Furthermore, the missense frequencies for the two polymers are within the same range: the missense substitution of Trp for Cys is 10(-4) and that of Met for Val is 10(-3) in the poly(U-G)-primed system. These data argue against models that explain the codon preference of certain gene families by postulating effects of high or low GC content of codons on the performance characteristics of ribosomes.

摘要

用N - 乙酰 - 缬氨酰 - tRNAVal预起始的大肠杆菌核糖体,在体外以每个核糖体每秒8至12个肽键的速率严格交替延伸聚(U - G)。与聚(U)引发的聚(苯丙氨酸)合成的比较表明,这些系统以与体内蛋白质合成相近的相同速率发挥作用。这表明,至少在体外,当三元复合物浓度饱和时,密码子组成对延伸速度没有显著影响。此外,两种聚合物的错义频率在同一范围内:在聚(U - G)引发的系统中,色氨酸错义取代半胱氨酸的频率为10^(-4),甲硫氨酸错义取代缬氨酸的频率为10^(-3)。这些数据与通过假设密码子的高或低GC含量对核糖体性能特征的影响来解释某些基因家族密码子偏好的模型相悖。