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不同结构和构象类型的单糖衍生物对短小芽孢杆菌12号菌株的转化β-木糖苷酶的竞争性抑制作用。一种可能的天然底物。

Competitive inhibition of the inverting beta-xylosidase of Bacillus pumilus 12 by monosaccharide derivatives of different structural and conformational types. A possible natural substrate.

作者信息

Marshall P J, Sinnott M L

出版信息

Biochem J. 1983 Oct 1;215(1):67-74. doi: 10.1042/bj2150067.

Abstract

The title enzyme is competitively inhibited by compounds, for example alpha-D-xylopyranosylpyridinium salts and 1,6-anhydro-D-glucopyranose, for which the normal 4C1 conformation of the xylopyranose ring is precluded. It is competitively inhibited by compounds, for example beta-D-xylopyranosylpyridinium salts and 1,6-anhydro-L-idopyranose, for which the 1C4 conformation is precluded, and which have no accessible conformations in common with the first set of inhibitors. It is also competitively inhibited by alpha-L-arabinofuranosides. Inhibition by 1,6-anhydroglucopyranose, 1,6-anhydro-L-idopyranose and L-arabinono-gamma-lactone is competitive with respect to each other. alpha-D-Xylopyranosyl fluoride is not a detectable substrate, by itself or in the presence of a representative of any of the three types of inhibitor. On the basis of these and literature data, it is proposed that the natural substrate is a hemicellulose fragment containing the D-Xylp beta (1 leads to 4)-[L-Araf alpha (1 leads to 3)]D-Xylp structure. Tentative inferences about the catalytic mechanism can also be drawn.

摘要

标题酶受到化合物的竞争性抑制,例如α-D-吡喃木糖基吡啶鎓盐和1,6-脱水-D-吡喃葡萄糖,这些化合物会阻止木糖吡喃糖环正常的4C1构象。它还受到化合物的竞争性抑制,例如β-D-吡喃木糖基吡啶鎓盐和1,6-脱水-L-艾杜糖吡喃糖,这些化合物会阻止1C4构象,并且与第一组抑制剂没有共同的可及构象。它也受到α-L-阿拉伯呋喃糖苷的竞争性抑制。1,6-脱水葡萄糖吡喃糖、1,6-脱水-L-艾杜糖吡喃糖和L-阿拉伯糖酸-γ-内酯之间的抑制作用相互竞争。α-D-吡喃木糖基氟本身或在三种抑制剂中的任何一种存在的情况下都不是可检测的底物。基于这些数据和文献资料,提出天然底物是含有D-Xylpβ(1→4)-[L-Arafα(1→3)]D-Xylp结构的半纤维素片段。还可以对催化机制做出初步推断。

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On the attribution and additivity of binding energies.关于结合能的归因和可加性。
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A possible mechanism for amylase catalysis.
J Theor Biol. 1968 Jun;19(3):297-310. doi: 10.1016/0022-5193(68)90141-0.

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