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真核细胞质5S核糖体RNA的二级结构

Secondary structure of eukaryotic cytoplasmic 5S ribosomal RNA.

作者信息

Luehrsen K R, Fox G E

出版信息

Proc Natl Acad Sci U S A. 1981 Apr;78(4):2150-4. doi: 10.1073/pnas.78.4.2150.

DOI:10.1073/pnas.78.4.2150
PMID:6787600
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC319301/
Abstract

A five-helix secondary structural model is proposed for eukaryotic cytoplasmic 5S rRNA. All available sequence data are consistent with this model including those from Chlorella 5S rRNA whose sequence is revised by data included here. Various architectural features of eukaryotic 5S rRNA are summarized in terms of this secondary structural model. It is observed that previous failures to identify universal models for 5S rRNA secondary structure stem from significant differences in architecture between eukaryotic cytoplasmic and eubacterial 5S rRNAs. The usual four-helix model for eubacterial 5S rRNA secondary structure nevertheless does share several structural features with the five-helix model presented here for cytoplasmic 5S rRNA. It is thus likely that these two classes of 5S rRNA are the result of evolutionary divergence rather than convergence.

摘要

本文提出了真核细胞质5S rRNA的五螺旋二级结构模型。所有可用的序列数据均与该模型一致,包括来自小球藻5S rRNA的数据,其序列已根据本文所包含的数据进行了修订。真核5S rRNA的各种结构特征根据该二级结构模型进行了总结。据观察,先前未能确定5S rRNA二级结构的通用模型是由于真核细胞质和细菌5S rRNA在结构上存在显著差异。然而,细菌5S rRNA二级结构通常的四螺旋模型与本文提出的细胞质5S rRNA的五螺旋模型确实有几个结构特征相同。因此,这两类5S rRNA很可能是进化分歧而非趋同的结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61c7/319301/cedade8ee89f/pnas00655-0195-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61c7/319301/8b1a005b53f6/pnas00655-0195-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61c7/319301/cedade8ee89f/pnas00655-0195-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61c7/319301/8b1a005b53f6/pnas00655-0195-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61c7/319301/cedade8ee89f/pnas00655-0195-b.jpg

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本文引用的文献

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Nucleic Acids Res. 1980 Nov 11;8(21):4911-7. doi: 10.1093/nar/8.21.4911.
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Collection of published 5S and 5.8S rRNA sequences and their precursors.已发表的5S和5.8S rRNA序列及其前体的收集。
Nucleic Acids Res. 1980 Jan 11;8(1):r31-r47. doi: 10.1093/nar/8.1.197-b.
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Nucleotide sequence of a 5S ribosomal RNA gene in the sea urchin Lytechinus variegatus.多色粗海胆5S核糖体RNA基因的核苷酸序列。
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The origin of the 5S ribosomal RNA molecule could have been caused by a single inverse duplication: strong evidence from its sequences.5S 核糖体 RNA 分子的起源可能是由单个反向重复引起的:来自其序列的有力证据。
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Characterization of a novel association between two trypanosome-specific proteins and 5S rRNA.鉴定两种原生动物特异性蛋白与 5S rRNA 之间的新关联。
PLoS One. 2012;7(1):e30029. doi: 10.1371/journal.pone.0030029. Epub 2012 Jan 12.
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Crystal structure of human polynucleotide phosphorylase: insights into its domain function in RNA binding and degradation.人多核苷酸磷酸化酶的晶体结构:揭示其在 RNA 结合和降解中的结构域功能。
Nucleic Acids Res. 2012 May;40(9):4146-57. doi: 10.1093/nar/gkr1281. Epub 2011 Dec 30.
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Eukaryotic 5S rRNA biogenesis.真核生物 5S rRNA 的生物发生。
Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):523-33. doi: 10.1002/wrna.74. Epub 2011 Feb 25.
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A model of the origin of the 5S ribosomal RNA molecule.5S核糖体RNA分子起源的一种模型。
J Mol Evol. 2010 Jul;71(1):1-2. doi: 10.1007/s00239-010-9358-7. Epub 2010 Jun 17.
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J Mol Evol. 2009 Nov;69(5):430-43. doi: 10.1007/s00239-009-9264-z. Epub 2009 Jul 29.
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