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酵母乙醇脱氢酶反应中的过渡态结构:溶剂和α-二级氢同位素效应的大小

Transition-state structure in the yeast alcohol dehydrogenase reaction: the magnitude of solvent and alpha-secondary hydrogen isotope effects.

作者信息

Welsh K M, Creighton D J, Klinman J P

出版信息

Biochemistry. 1980 May 13;19(10):2005-16. doi: 10.1021/bi00551a001.

Abstract

Solvent and alpha-secondary isotope effects have been measured in the yeast alcohol dehydrogenase reaction, under conditions of a rate-limiting transfer of hydrogen between coenzyme and substrate. Determination of catalytic constants (at saturating concentrations of substrate and coenzyme) in H2O and D2O as a function of pH(D) has allowed the separation of solvent effects on pKa from kcat: delta pKa = pKD--pKH = 0.02--0.21, kH2O/kD2O = 1.20 +/- 0.09 in the direction of p-methoxybenzyl alcohol oxidation, and kH2O/kD2O = 0.50 +/- 0.05 and 0.58 +/- 0.06 for p-methoxybenzaldehyde reducation by NADH and [4-2H]NADH. The small effect of D2O on pKa, which contrasts with the common observation that delta pKa congruent to 0.4--0.6, is tentatively assigned to ionization of an active-site ZnOH2. The near absence of an isotope effect on kcat in the direction of alcohol oxidation rules out a mechanism involving concerted catalysis by an active-site base of hydride transfer. In the direction of aldehyde reduction, the observation of inverse isotope effects on kcat is concluded to reflect displacement of zinc-bound water by substrate to form an inner-sphere complex, subsequent to the E.S complex. Equilibrium alpha-secondary isotope effects, measured as a frame of reference for kinetic values, indicate KH/KT = 1.33 +/- 0.05 and 1.34 +/- 0.09 for the oxidation of [1(S)-3H]benzyl alcohol and p-methoxy[1(S)-3H]benzyl alcohol, respectively. Kinetic alpha-secondary isotope effects are within experimental error of equilibrium values, kH/kT = 1.34 +/- 0.07 and 1.38 +/- 0.02 for [1(S)-3H]benzyl alcohol and p-methoxy[1(S)-3H]benzyl alcohol oxidation, respectively. The near identity of kinetic and equilibrium alpha-secondary isotope effects in the direction of alcohol oxidation implicates a transition-state structure which resembles aldehyde with regard to bond hybridization properties. This result contrasts sharply with previously reported structure--reactivity correlations, which implicate a transition-state structure resembling alcohol with regard to charge properties. The significance of these findings to the mechanism of NAD(P)H-dependent redox reactions is discussed.

摘要

在辅酶与底物之间氢转移限速的条件下,已对酵母乙醇脱氢酶反应中的溶剂和α-二级同位素效应进行了测定。通过测定H₂O和D₂O中催化常数(在底物和辅酶饱和浓度下)作为pH(D)的函数,得以将溶剂对pKa的影响与kcat分离:在对甲氧基苄醇氧化方向上,ΔpKa = pKD - pKH = 0.02 - 0.21,kH₂O/kD₂O = 1.20 ± 0.09;对于NADH和[4-²H]NADH还原对甲氧基苯甲醛,kH₂O/kD₂O分别为0.50 ± 0.05和0.58 ± 0.06。D₂O对pKa的影响较小,这与常见观察结果(ΔpKa约为0.4 - 0.6)形成对比,初步认为这是由于活性位点ZnOH₂的电离所致。在醇氧化方向上,kcat几乎不存在同位素效应,这排除了涉及活性位点碱协同催化氢化物转移的机制。在醛还原方向上,观察到kcat存在逆同位素效应,这被认为反映了底物取代锌结合水以形成内球络合物,该过程发生在E.S络合物之后。作为动力学值参考框架测定的平衡α-二级同位素效应表明,对于[1(S)-³H]苄醇和对甲氧基[1(S)-³H]苄醇的氧化,KH/KT分别为1.33 ± 0.05和1.34 ± 0.09。动力学α-二级同位素效应在平衡值的实验误差范围内,对于[1(S)-³H]苄醇和对甲氧基[1(S)-³H]苄醇的氧化,kH/kT分别为1.34 ± 0.07和1.38 ± 0.02。在醇氧化方向上,动力学和平衡α-二级同位素效应几乎相同,这意味着过渡态结构在键杂化性质方面类似于醛。这一结果与先前报道的结构 - 反应性相关性形成鲜明对比,先前的相关性表明过渡态结构在电荷性质方面类似于醇。讨论了这些发现对NAD(P)H依赖性氧化还原反应机制的意义。

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