• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

人类免疫缺陷病毒1型基因组的G→A超突变:逆转录过程中dCTP池失衡的证据。

G-->A hypermutation of the human immunodeficiency virus type 1 genome: evidence for dCTP pool imbalance during reverse transcription.

作者信息

Vartanian J P, Meyerhans A, Sala M, Wain-Hobson S

机构信息

Unité de Rétrovirologie Moléculaire, Institut Pasteur, Paris, France.

出版信息

Proc Natl Acad Sci U S A. 1994 Apr 12;91(8):3092-6. doi: 10.1073/pnas.91.8.3092.

DOI:10.1073/pnas.91.8.3092
PMID:7512722
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC43521/
Abstract

The quasispecies model for RNA viruses predicts the existence of a replication error threshold beyond which there is a melting or total loss of sequence information. Retroviral G-->A hypermutation is probably an example. Here it is shown that G-->A transitions may occur in both GpG and GpA dinucleotide contexts. Transitions in GpG preferentially occur via base mispairing at the ends of runs of G residues, whereas G-->A transitions within GpA may result from temporary dislocation of the primer and template strands by a single base. The two circumstances may be related by the local dCTP substrate concentration. An in vitro elongation assay shows that primer/template dislocation is more frequent for the human immunodeficiency virus type 1 reverse transcriptase than for murine or avian retroviral enzymes. Taken together these data suggest that G-->A hypermutation is an example of induced mutation whereby the viral reverse transcriptase is forced into making errors by imbalances in the intracellular dCTP concentration.

摘要

RNA病毒的准种模型预测存在一个复制错误阈值,超过该阈值会出现序列信息的熔解或完全丧失。逆转录病毒的G→A超突变可能就是一个例子。本文表明,G→A转换可能发生在GpG和GpA二核苷酸环境中。GpG中的转换优先通过G残基连续序列末端的碱基错配发生,而GpA内的G→A转换可能是由于引物和模板链单碱基的暂时错位导致的。这两种情况可能与局部dCTP底物浓度有关。体外延伸试验表明,人类免疫缺陷病毒1型逆转录酶比鼠类或禽类逆转录病毒酶更容易发生引物/模板错位。综合这些数据表明,G→A超突变是诱导突变的一个例子,即病毒逆转录酶因细胞内dCTP浓度失衡而被迫出错。

相似文献

1
G-->A hypermutation of the human immunodeficiency virus type 1 genome: evidence for dCTP pool imbalance during reverse transcription.人类免疫缺陷病毒1型基因组的G→A超突变:逆转录过程中dCTP池失衡的证据。
Proc Natl Acad Sci U S A. 1994 Apr 12;91(8):3092-6. doi: 10.1073/pnas.91.8.3092.
2
Reverse transcriptase and substrate dependence of the RNA hypermutagenesis reaction.RNA 超突变反应的逆转录酶与底物依赖性
Nucleic Acids Res. 1995 Jul 25;23(14):2573-8. doi: 10.1093/nar/23.14.2573.
3
Unequal human immunodeficiency virus type 1 reverse transcriptase error rates with RNA and DNA templates.1型人类免疫缺陷病毒逆转录酶对RNA和DNA模板的错误率不同。
Proc Natl Acad Sci U S A. 1992 Aug 1;89(15):6919-23. doi: 10.1073/pnas.89.15.6919.
4
Error-prone polymerization by HIV-1 reverse transcriptase. Contribution of template-primer misalignment, miscoding, and termination probability to mutational hot spots.HIV-1逆转录酶的易错聚合作用。模板引物错配、错编码和终止概率对突变热点的影响。
J Biol Chem. 1993 May 15;268(14):10324-34.
5
Template-directed pausing of DNA synthesis by HIV-1 reverse transcriptase during polymerization of HIV-1 sequences in vitro.在体外HIV-1序列聚合过程中,HIV-1逆转录酶通过模板指导的方式暂停DNA合成。
J Biol Chem. 1993 May 5;268(13):9793-802.
6
Marked infidelity of human immunodeficiency virus type 1 reverse transcriptase at RNA and DNA template ends.1型人类免疫缺陷病毒逆转录酶在RNA和DNA模板末端存在明显的错配。
Proc Natl Acad Sci U S A. 1994 Jan 18;91(2):549-53. doi: 10.1073/pnas.91.2.549.
7
Hypermutagenesis of RNA using human immunodeficiency virus type 1 reverse transcriptase and biased dNTP concentrations.利用1型人类免疫缺陷病毒逆转录酶和偏倚的脱氧核苷三磷酸浓度对RNA进行高突变
Proc Natl Acad Sci U S A. 1994 Dec 6;91(25):11787-91. doi: 10.1073/pnas.91.25.11787.
8
Comparison of HIV-1 and avian myeloblastosis virus reverse transcriptase fidelity on RNA and DNA templates.HIV-1与禽成髓细胞瘤病毒逆转录酶在RNA和DNA模板上保真度的比较。
J Biol Chem. 1992 May 25;267(15):10888-96.
9
Affinity modification of human immunodeficiency virus reverse transcriptase and DNA template by photoreactive dCTP analogs.
FEBS Lett. 1994 Nov 7;354(2):200-2. doi: 10.1016/0014-5793(94)01110-9.
10
A new type of G-->A hypermutation affecting human immunodeficiency virus.一种影响人类免疫缺陷病毒的新型G→A高突变
AIDS Res Hum Retroviruses. 1993 Sep;9(9):833-8. doi: 10.1089/aid.1993.9.833.

引用本文的文献

1
A simple phylogenetic approach to analyze hypermutated HIV proviruses reveals insights into their dynamics and persistence during antiretroviral therapy.一种用于分析高度突变的HIV前病毒的简单系统发育方法揭示了它们在抗逆转录病毒治疗期间的动态变化和持续性。
Res Sq. 2024 Jun 13:rs.3.rs-4549934. doi: 10.21203/rs.3.rs-4549934/v1.
2
Molecular transition of SARS-CoV-2 from critical patients during the first year of the COVID-19 pandemic in Mexico City.墨西哥城 COVID-19 大流行第一年期间重症患者体内的 SARS-CoV-2 分子转变。
Front Cell Infect Microbiol. 2023 May 16;13:1155938. doi: 10.3389/fcimb.2023.1155938. eCollection 2023.
3

本文引用的文献

1
Restriction and enhancement of human immunodeficiency virus type 1 replication by modulation of intracellular deoxynucleoside triphosphate pools.通过调节细胞内脱氧核苷三磷酸池来限制和增强1型人类免疫缺陷病毒的复制
J Virol. 1994 Jan;68(1):535-40. doi: 10.1128/JVI.68.1.535-540.1994.
2
Vesicular stomatitis virus defective interfering particles can contain extensive genomic sequence rearrangements and base substitutions.水泡性口炎病毒缺陷干扰颗粒可包含广泛的基因组序列重排和碱基替换。
Cell. 1984 Apr;36(4):915-24. doi: 10.1016/0092-8674(84)90041-2.
3
The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation.
Extensive C->U transition biases in the genomes of a wide range of mammalian RNA viruses; potential associations with transcriptional mutations, damage- or host-mediated editing of viral RNA.
多种哺乳动物RNA病毒基因组中广泛存在的C到U转换偏向性;与转录突变、病毒RNA的损伤介导或宿主介导编辑的潜在关联。
PLoS Pathog. 2021 Jun 1;17(6):e1009596. doi: 10.1371/journal.ppat.1009596. eCollection 2021 Jun.
4
Rampant C→U Hypermutation in the Genomes of SARS-CoV-2 and Other Coronaviruses: Causes and Consequences for Their Short- and Long-Term Evolutionary Trajectories.SARS-CoV-2 和其他冠状病毒基因组中猖獗的 C→U 超突变:对其短期和长期进化轨迹的原因和后果。
mSphere. 2020 Jun 24;5(3):e00408-20. doi: 10.1128/mSphere.00408-20.
5
Hypermutations in porcine respiratory and reproductive syndrome virus.猪繁殖与呼吸综合征病毒中的高突变
Can J Vet Res. 2019 Apr;83(2):104-109.
6
Increasing the CpG dinucleotide abundance in the HIV-1 genomic RNA inhibits viral replication.增加 HIV-1 基因组 RNA 中的 CpG 二核苷酸丰度可抑制病毒复制。
Retrovirology. 2017 Nov 9;14(1):49. doi: 10.1186/s12977-017-0374-1.
7
HIV-1 tolerates changes in A-count in a small segment of the pol gene.HIV-1 能容忍 pol 基因一小段中 A 计数的变化。
Retrovirology. 2017 Sep 5;14(1):43. doi: 10.1186/s12977-017-0367-0.
8
The Evolution of LINE-1 in Vertebrates.脊椎动物中LINE-1的进化
Genome Biol Evol. 2016 Dec 1;8(12):3485-3507. doi: 10.1093/gbe/evw247.
9
Mechanism of Enhanced HIV Restriction by Virion Coencapsidated Cytidine Deaminases APOBEC3F and APOBEC3G.病毒体共包装胞苷脱氨酶APOBEC3F和APOBEC3G增强HIV限制的机制
J Virol. 2017 Jan 18;91(3). doi: 10.1128/JVI.02230-16. Print 2017 Feb 1.
10
Long-Range HIV Genotyping Using Viral RNA and Proviral DNA for Analysis of HIV Drug Resistance and HIV Clustering.使用病毒RNA和前病毒DNA进行HIV耐药性分析及HIV聚类的远程HIV基因分型
J Clin Microbiol. 2015 Aug;53(8):2581-92. doi: 10.1128/JCM.00756-15. Epub 2015 Jun 3.
真核生物DNA聚合酶的碱基置换保真度。错配频率、位点偏好、插入偏好以及通过错位进行的碱基置换。
J Biol Chem. 1986 Jan 5;261(1):160-6.
4
Next-nucleotide effects in mutations driven by DNA precursor pool imbalances at the aprt locus of Chinese hamster ovary cells.中国仓鼠卵巢细胞aprt基因座处由DNA前体库失衡驱动的突变中的下一个核苷酸效应。
Proc Natl Acad Sci U S A. 1987 Jul;84(13):4450-4. doi: 10.1073/pnas.84.13.4450.
5
Secreted placental alkaline phosphatase: a powerful new quantitative indicator of gene expression in eukaryotic cells.分泌型胎盘碱性磷酸酶:一种用于真核细胞基因表达的强大新型定量指标。
Gene. 1988 Jun 15;66(1):1-10. doi: 10.1016/0378-1119(88)90219-3.
6
Rapid evolution of RNA viruses.RNA病毒的快速进化
Annu Rev Microbiol. 1987;41:409-33. doi: 10.1146/annurev.mi.41.100187.002205.
7
Biased hypermutation and other genetic changes in defective measles viruses in human brain infections.人脑感染中缺陷性麻疹病毒的偏向性高突变及其他基因变化。
Cell. 1988 Oct 21;55(2):255-65. doi: 10.1016/0092-8674(88)90048-7.
8
Biased hypermutation of viral RNA genomes could be due to unwinding/modification of double-stranded RNA.病毒RNA基因组的偏向性超突变可能是由于双链RNA的解旋/修饰所致。
Cell. 1989 Feb 10;56(3):331. doi: 10.1016/0092-8674(89)90234-1.
9
HIV-1 isolates are rapidly evolving quasispecies: evidence for viral mixtures and preferred nucleotide substitutions.HIV-1分离株是快速进化的准种:病毒混合及优先核苷酸替换的证据。
J Acquir Immune Defic Syndr (1988). 1989;2(4):344-52.
10
The molecular basis of mutations induced by deoxyribonucleoside triphosphate pool imbalances in mammalian cells.
Exp Cell Res. 1989 Apr;181(2):305-16. doi: 10.1016/0014-4827(89)90090-6.