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PRP28是一种“DEAD盒”蛋白,是体外mRNA剪接第一步所必需的。

PRP28, a 'DEAD-box' protein, is required for the first step of mRNA splicing in vitro.

作者信息

Strauss E J, Guthrie C

机构信息

Department of Biochemistry, University of California, San Francisco 94143-0448.

出版信息

Nucleic Acids Res. 1994 Aug 11;22(15):3187-93. doi: 10.1093/nar/22.15.3187.

DOI:10.1093/nar/22.15.3187
PMID:7520570
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC310295/
Abstract

We previously reported the isolation of PRP28, a gene in Saccharomyces cerevisiae whose activity is required for the first step of nuclear mRNA splicing in vivo. Sequence analysis revealed that PRP28 is included in the 'DEAD-box' gene family, members of which are thought to function as ATP-dependent RNA helicases. Genetic interactions led us to suggest that PRP28 is functionally associated with the U4/U5/U6 snRNP. We have now purified the PRP28 protein from S. cerevisiae and demonstrated that it is required for the first step of splicing in vitro. Interestingly, PRP28 is not a stably associated snRNP protein. Strand displacement assays indicate that PRP28 does not exhibit RNA helicase activity, suggesting that an additional factor or factors may be required for its activation.

摘要

我们之前报道过酿酒酵母中PRP28基因的分离,该基因的活性是体内核mRNA剪接第一步所必需的。序列分析表明PRP28属于“DEAD-box”基因家族,该家族成员被认为作为依赖ATP的RNA解旋酶发挥作用。遗传相互作用使我们推测PRP28在功能上与U4/U5/U6 snRNP相关。我们现在已经从酿酒酵母中纯化出PRP28蛋白,并证明它是体外剪接第一步所必需的。有趣的是,PRP28不是一种稳定结合的snRNP蛋白。链置换分析表明PRP28不表现出RNA解旋酶活性,这表明其激活可能需要一个或多个其他因子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/d761e6d6d210/nar00039-0337-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/bd3145287733/nar00039-0335-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/90dd1599e071/nar00039-0336-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/0b0b6d08423b/nar00039-0336-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/d761e6d6d210/nar00039-0337-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/bd3145287733/nar00039-0335-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/90dd1599e071/nar00039-0336-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/0b0b6d08423b/nar00039-0336-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cea6/310295/d761e6d6d210/nar00039-0337-a.jpg

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本文引用的文献

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Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1.利用一种灵敏的新报告基因CUP1对酿酒酵母前体mRNA剪接进行突变分析。
Genetics. 1993 Apr;133(4):851-63. doi: 10.1093/genetics/133.4.851.
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The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis.DEAD盒RNA解旋酶真核生物翻译起始因子4A的HRIGRXXR区域是RNA结合和ATP水解所必需的。
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Messenger RNA splicing in vitro: an excised intervening sequence and a potential intermediate.
秀丽隐杆线虫中的正向遗传学筛选鉴定出剪接体蛋白 PRP8 和 SNRNP200/BRR2 的保守残基在维持 5' 剪接位点同一性方面起作用。
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SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis.SMA1, splicing 因子 Prp28 的同源物,在拟南芥 miRNA 生物发生中具有多方面的作用。
Nucleic Acids Res. 2018 Sep 28;46(17):9148-9159. doi: 10.1093/nar/gky591.
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A spliceosome intermediate with loosely associated tri-snRNP accumulates in the absence of Prp28 ATPase activity.在缺乏 Prp28 ATP 酶活性的情况下,会积累与三 snRNP 松散结合的剪接体中间产物。
Nat Commun. 2016 Jul 5;7:11997. doi: 10.1038/ncomms11997.
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Mutant allele of rna14 in fission yeast affects pre-mRNA splicing.裂殖酵母中rna14的突变等位基因影响前体mRNA剪接。
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Evidence for the existence of snRNAs U4 and U6 in a single ribonucleoprotein complex and for their association by intermolecular base pairing.存在于单个核糖核蛋白复合体中的小核RNA U4和U6以及它们通过分子间碱基配对相互关联的证据。
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U4 and U6 RNAs coexist in a single small nuclear ribonucleoprotein particle.U4和U6核糖核酸共同存在于单个小核核糖核蛋白颗粒中。
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The "spliceosome": yeast pre-messenger RNA associates with a 40S complex in a splicing-dependent reaction.“剪接体”:酵母前体信使核糖核酸在剪接依赖性反应中与一个40S复合体结合。
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