小亚基（16S及类似16S）核糖体RNA结构集：1994年。
Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994.
作者信息
Gutell R R
机构信息
MCB Biology, University of Colorado, Boulder 80309-0347.
出版信息
Nucleic Acids Res. 1994 Sep;22(17):3502-7. doi: 10.1093/nar/22.17.3502.
Abstract
A collection of diverse 16S and 16S-like rRNA secondary structure diagrams are available. This set of rRNAs contains representative structures from all of the major phylogenetic groupings--Archaea, (eu)Bacteria, and the nucleus, mitochondrion, and chloroplast of Eucarya. Within this broad phylogenetic sampling are examples of the major forms of structural diversity currently known for this class of rRNAs. These structure diagrams are available online through our computer-network WWW server and anonymous ftp, as well as from the author in hardcopy format.
摘要
现有一系列多样的16S和类16S rRNA二级结构图。这组rRNA包含来自所有主要系统发育类群的代表性结构——古细菌、（真）细菌，以及真核生物的细胞核、线粒体和叶绿体。在这个广泛的系统发育样本中，有目前已知的这类rRNA主要结构多样性形式的示例。这些结构图可通过我们的计算机网络万维网服务器和匿名文件传输协议在线获取，也可从作者处获得硬拷贝格式。
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本文引用的文献
1
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Science. 1983 Aug 12;221(4611):656-9. doi: 10.1126/science.221.4611.656.
2
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.从不断演变的核糖体RNA中汲取的经验教训：从比较的角度看16S和23S核糖体RNA结构
Microbiol Rev. 1994 Mar;58(1):10-26. doi: 10.1128/mr.58.1.10-26.1994.
3
The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi.嗜肺内阿米巴异常长的小亚基核糖体RNA
Nucleic Acids Res. 1994 Feb 11;22(3):465-9. doi: 10.1093/nar/22.3.465.
4
Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA.莱茵衣藻线粒体DNA中混乱的核糖体RNA基因片段。
Cell. 1988 Nov 4;55(3):399-411. doi: 10.1016/0092-8674(88)90026-8.
5
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.迈向生物自然分类系统：关于古菌域、细菌域和真核生物域的提议。
Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576-9. doi: 10.1073/pnas.87.12.4576.
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Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.识别RNA高阶结构的限制因素：比较序列分析方法的持续发展与应用
Nucleic Acids Res. 1992 Nov 11;20(21):5785-95. doi: 10.1093/nar/20.21.5785.
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