小核糖体亚基RNA结构数据库。
Database on the structure of small ribosomal subunit RNA.
作者信息
Van de Peer Y, Van den Broeck I, De Rijk P, De Wachter R
机构信息
Departement Biochemie, Universiteit Antwerpen (UIA), Belgium.
出版信息
Nucleic Acids Res. 1994 Sep;22(17):3488-94. doi: 10.1093/nar/22.17.3488.
Abstract
The database on small ribosomal subunit RNA structure contains (June 1994) 2824 nucleotide sequences. All these sequences are stored in the form of an alignment based on the adopted secondary structure model, which in turn is corroborated by the observation of compensating substitutions in the alignment. The complete database is made available to the scientific community through anonymous ftp on our server in Antwerp. A special effort was made to improve electronic retrieval and a program is supplied that allows to create different file formats. The database can also be obtained from the EMBL nucleotide sequence library.
摘要
关于小核糖体亚基RNA结构的数据库（截至1994年6月）包含2824个核苷酸序列。所有这些序列均以基于所采用的二级结构模型的比对形式存储，而这种比对又通过观察比对中的补偿性替换得到了证实。完整的数据库通过我们在安特卫普服务器上的匿名ftp向科学界提供。我们特别努力改进电子检索，并提供了一个程序，可用于创建不同的文件格式。该数据库也可从EMBL核苷酸序列库获取。
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本文引用的文献
1
TREECON: a software package for the construction and drawing of evolutionary trees.TREECON：一个用于构建和绘制进化树的软件包。
Comput Appl Biosci. 1993 Apr;9(2):177-82. doi: 10.1093/bioinformatics/9.2.177.
2
Ribosomal RNA: a key to phylogeny.核糖体RNA：系统发育的关键。
FASEB J. 1993 Jan;7(1):113-23. doi: 10.1096/fasebj.7.1.8422957.
3
Compilation of small ribosomal subunit RNA structures.小核糖体亚基RNA结构汇编
Nucleic Acids Res. 1993 Jul 1;21(13):3025-49. doi: 10.1093/nar/21.13.3025.
4
The EMBL data library.欧洲分子生物学实验室数据库
Nucleic Acids Res. 1993 Jul 1;21(13):2967-71. doi: 10.1093/nar/21.13.2967.
5
GenBank.基因银行
Nucleic Acids Res. 1993 Jul 1;21(13):2963-5. doi: 10.1093/nar/21.13.2963.
6
The winds of (evolutionary) change: breathing new life into microbiology.（进化的）变革之风：为微生物学注入新的活力。
J Bacteriol. 1994 Jan;176(1):1-6. doi: 10.1128/jb.176.1.1-6.1994.
7
DCSE, an interactive tool for sequence alignment and secondary structure research.DCSE，一种用于序列比对和二级结构研究的交互式工具。
Comput Appl Biosci. 1993 Dec;9(6):735-40. doi: 10.1093/bioinformatics/9.6.735.
8
The neighbor-joining method: a new method for reconstructing phylogenetic trees.邻接法：一种重建系统发育树的新方法。
Mol Biol Evol. 1987 Jul;4(4):406-25. doi: 10.1093/oxfordjournals.molbev.a040454.
9
Bacterial evolution.细菌进化
Microbiol Rev. 1987 Jun;51(2):221-71. doi: 10.1128/mr.51.2.221-271.1987.
10
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Nucleic Acids Res. 1991 Apr 25;19 Suppl(Suppl):1987-2015. doi: 10.1093/nar/19.suppl.1987.
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