来自沙质海洋沉积物中硫酸盐还原菌的16S rRNA序列的系统发育树。
A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment.
作者信息
Devereux R, Mundfrom G W
机构信息
U.S. Environmental Protection Agency, Gulf Breeze, Florida.
出版信息
Appl Environ Microbiol. 1994 Sep;60(9):3437-9. doi: 10.1128/aem.60.9.3437-3439.1994.
Abstract
The divergence of 16S rDNA sequences in marine sediment was investigated. Twenty unique partial sequences were found among 33 cloned following PCR. Thirteen shared 82 to 91% similarity with sequences of delta subclass sulfate-reducing bacteria. Three contained the target sequence for a sulfate-reducing bacterium-specific oligonucleotide probe designed from pure-culture studies.
摘要
对海洋沉积物中16S rDNA序列的差异进行了研究。PCR扩增后克隆得到的33个序列中发现了20个独特的部分序列。其中13个与δ亚类硫酸盐还原菌的序列具有82%至91%的相似性。3个序列含有根据纯培养研究设计的硫酸盐还原菌特异性寡核苷酸探针的靶序列。
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本文引用的文献
1
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2
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Appl Environ Microbiol. 1994 Feb;60(2):697-704. doi: 10.1128/aem.60.2.697-704.1994.
3
Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences.利用根据环境来源的16S rRNA序列设计的寡核苷酸杂交探针监测硫酸盐还原菌的富集和分离。
Appl Environ Microbiol. 1993 Mar;59(3):682-6. doi: 10.1128/aem.59.3.682-686.1993.
4
Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology.基于系统发育的杂交探针在瘤胃微生物生态学研究中的应用。
Appl Environ Microbiol. 1988 May;54(5):1079-84. doi: 10.1128/aem.54.5.1079-1084.1988.
5
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6
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Annu Rev Microbiol. 1986;40:337-65. doi: 10.1146/annurev.mi.40.100186.002005.
7
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.用于系统发育分析的16S核糖体RNA序列的快速测定。
Proc Natl Acad Sci U S A. 1985 Oct;82(20):6955-9. doi: 10.1073/pnas.82.20.6955.
8
Diversity and origin of Desulfovibrio species: phylogenetic definition of a family.脱硫弧菌属的多样性与起源：一个科的系统发育定义
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9
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10
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