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Kinking of DNA and RNA by base bulges.

作者信息

Lilley D M

机构信息

Department of Biochemistry, The University, Dundee, United Kingdom.

出版信息

Proc Natl Acad Sci U S A. 1995 Aug 1;92(16):7140-2. doi: 10.1073/pnas.92.16.7140.

DOI:10.1073/pnas.92.16.7140
PMID:7543675
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC41294/
Abstract
摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b72/41294/7448b403e517/pnas01494-0014-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b72/41294/ee6c5b0ef4cd/pnas01494-0013-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b72/41294/24607e56e5eb/pnas01494-0014-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b72/41294/7448b403e517/pnas01494-0014-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b72/41294/ee6c5b0ef4cd/pnas01494-0013-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b72/41294/24607e56e5eb/pnas01494-0014-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b72/41294/7448b403e517/pnas01494-0014-b.jpg

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本文引用的文献

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Bent helical structure in kinetoplast DNA.动基体 DNA 的弯曲螺旋结构。
Proc Natl Acad Sci U S A. 1982 Dec;79(24):7664-8. doi: 10.1073/pnas.79.24.7664.
2
Nuclear magnetic resonance study of a deoxyoligonucleotide duplex containing a three base bulge.含三碱基凸起的脱氧寡核苷酸双链体的核磁共振研究
J Mol Biol. 1993 Jan 5;229(1):173-88. doi: 10.1006/jmbi.1993.1016.
3
Bulge-induced bends in RNA: quantification by transient electric birefringence.RNA中凸起诱导的弯曲：通过瞬态电双折射进行定量分析。
PRIMA：一种使用探针诱导的异源双链体快速且具有成本效益的基因分型方法，用于检测单核苷酸差异。
Sci Rep. 2021 Oct 24;11(1):20741. doi: 10.1038/s41598-021-99641-x.
4
Evolutionary conservation of RNA sequence and structure.RNA 序列和结构的进化保守性。
Wiley Interdiscip Rev RNA. 2021 Sep;12(5):e1649. doi: 10.1002/wrna.1649. Epub 2021 Mar 22.
5
Bulges in left-handed G-quadruplexes.左手 G-四链体中的凸起。
Nucleic Acids Res. 2021 Feb 22;49(3):1724-1736. doi: 10.1093/nar/gkaa1259.
6
Rational design of a quantitative, pH-insensitive, nucleic acid based fluorescent chloride reporter.基于核酸的定量、pH不敏感荧光氯离子报告分子的合理设计。
Chem Sci. 2016 Mar 1;7(3):1946-1953. doi: 10.1039/c5sc04002g. Epub 2015 Dec 1.
7
Increasing the length of poly-pyrimidine bulges broadens RNA conformational ensembles with minimal impact on stacking energetics.增加聚嘧啶凸起的长度会在最小程度上影响堆积能的情况下拓宽 RNA 构象集合。
RNA. 2018 Oct;24(10):1363-1376. doi: 10.1261/rna.066258.118. Epub 2018 Jul 16.
8
Increased Flexibility between Stems of Intramolecular Three-Way Junctions by the Insertion of Bulges.通过插入环，增加分子内三链结茎部的灵活性。
Biophys J. 2018 Jun 19;114(12):2764-2774. doi: 10.1016/j.bpj.2018.05.001.
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RNA. 2017 Feb;23(2):217-228. doi: 10.1261/rna.056168.116. Epub 2016 Nov 21.
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Determination of the secondary structure of group II bulge loops using the fluorescent probe 2-aminopurine.使用荧光探针2-氨基嘌呤测定II型凸起环的二级结构。
RNA. 2015 May;21(5):975-84. doi: 10.1261/rna.048306.114. Epub 2015 Mar 24.
J Mol Biol. 1995 Mar 31;247(3):486-500. doi: 10.1006/jmbi.1995.0155.
4
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6
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Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence.对来自突变热点序列的含凸起DNA寡核苷酸的质子核磁共振研究。
Biochemistry. 1987 Feb 10;26(3):904-12. doi: 10.1021/bi00377a035.
9
Structural model for an oligonucleotide containing a bulged guanosine by NMR and energy minimization.通过核磁共振和能量最小化得到的含凸起鸟苷的寡核苷酸的结构模型。
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10
Extra thymidine stacks into the d(CTGGTGCGG).d(CCGCCCAG) duplex. An NMR and model-building study.额外的胸腺嘧啶堆积到d(CTGGTGCGG).d(CCGCCCAG)双链体中。一项核磁共振与模型构建研究。
Nucleic Acids Res. 1988 Apr 11;16(7):2971-86. doi: 10.1093/nar/16.7.2971.