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模拟突变和同源蛋白。

Modeling mutations and homologous proteins.

作者信息

Sali A

机构信息

The Rockefeller University, New York, USA.

出版信息

Curr Opin Biotechnol. 1995 Aug;6(4):437-51. doi: 10.1016/0958-1669(95)80074-3.

DOI:10.1016/0958-1669(95)80074-3
PMID:7579655
Abstract

A protein sequence with at lease 40% identity to a known structure can now be modelled automatically, with an accuracy approaching that o fa low-resolution X-ray structure or a medium-resolution nuclear magnetic resonance structure. In general, these models have goods stereochemistry and an overall structural accuracy that is as high as the similarity between the template and the actual structure being predicted. As a result, the number of sequences that can be modelled is an order of magnitude larger then the number of experimentally determined protein structures. In addition, evaluation techniques are available that can estimated errors in different regions of the model. Thus, the number of applications where homology modelling is proving useful is growing rapidly.

摘要

现在,与已知结构具有至少40%同一性的蛋白质序列可以自动建模,其准确性接近低分辨率X射线结构或中等分辨率核磁共振结构。一般来说,这些模型具有良好的立体化学性质和较高的整体结构准确性,与模板和预测的实际结构之间的相似度一样高。因此,可以建模的序列数量比通过实验确定的蛋白质结构数量大一个数量级。此外,还有评估技术可用于估计模型不同区域的误差。因此,同源建模证明有用的应用数量正在迅速增加。

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1
Modeling mutations and homologous proteins.模拟突变和同源蛋白。
Curr Opin Biotechnol. 1995 Aug;6(4):437-51. doi: 10.1016/0958-1669(95)80074-3.
2
Comparative protein modeling by satisfaction of spatial restraints.通过空间约束满足进行比较蛋白质建模。
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Advances in comparative protein-structure modelling.比较蛋白质结构建模的进展。
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4
How similar must a template protein be for homology modeling by side-chain packing methods?对于通过侧链堆积方法进行同源建模而言,模板蛋白必须有多相似?
Pac Symp Biocomput. 1996:126-41.
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Analysis, clustering and prediction of the conformation of short and medium size loops connecting regular secondary structures.连接规则二级结构的短、中长度环构象的分析、聚类和预测。
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Comparative modeling without implicit sequence alignments.无隐式序列比对的比较建模。
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Evaluation of comparative protein modeling by MODELLER.使用MODELLER进行比较蛋白质建模的评估。
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Database of homology-derived protein structures and the structural meaning of sequence alignment.同源性衍生蛋白质结构数据库及序列比对的结构意义
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SPINFAST: using structure alignment profiles to enhance the accuracy and assess the reliability of protein side-chain modeling.SPINFAST:利用结构比对概况提高蛋白质侧链建模的准确性并评估其可靠性。
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Multiple model approach--dealing with alignment ambiguities in protein modeling.多模型方法——处理蛋白质建模中的比对模糊性
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